PGSC0003DMG400000419 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400000419 T125792_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400001105 C2H2 ZF 257 279
PGSC0003DMT400001105 C2H2 ZF 280 309

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc11g066420.1 Solanum lycopersicum Solyc11g066420.1 N 0.827
GSMUA_Achr1G15330_001 Musa acuminata GSMUA_Achr1G15330_001 N 0.821
gene01102-v1.0-hybrid Fragaria vesca gene01102-v1.0-hybrid N 0.817
Ciclev10029984m.g Citrus clementina Ciclev10029984m.g N 0.817
TCM_041585 Theobroma cacao TCM_041585 N 0.817
PRUPE_ppa019036mg Prunus persica PRUPE_ppa019036mg N 0.817
POPTR_0004s22670 Populus trichocarpa POPTR_0004s22670 N 0.817
orange1.1g042026m.g Citrus sinensis orange1.1g042026m.g N 0.817
Eucgr.B03926 Eucalyptus grandis Eucgr.B03926 N 0.817
orange1.1g044007m.g Citrus sinensis orange1.1g044007m.g N 0.817
Eucgr.J00391 Eucalyptus grandis Eucgr.J00391 N 0.817
Ciclev10029807m.g Citrus clementina Ciclev10029807m.g N 0.817
SapurV1A.0360s0140 Salix purpurea SapurV1A.0360s0140 N 0.817
Gorai.009G090000 Gossypium raimondii Gorai.009G090000 N 0.817
MDP0000224892 Malus domestica MDP0000224892 N 0.817
MDP0000610922 Malus domestica MDP0000610922 N 0.817
mgf025993m Mimulus guttatus mgf025993m N 0.817
cassava28521.m1 Manihot esculenta cassava28521.m1 N 0.817
GLYMA12G30285 Glycine max GLYMA12G30285 N 0.817
Ca_07000 Cicer arietinum Ca_07000 N 0.817
Pm001162 Prunus mume Pm001162 N 0.817
cassava27114.m1 Manihot esculenta cassava27114.m1 N 0.817
Gorai.006G104700 Gossypium raimondii Gorai.006G104700 N 0.815
OS04G0165200 Oryza sativa OS04G0165200 N 0.812
ORGLA04G0016600 Oryza glaberrima ORGLA04G0016600 N 0.812
OGLUM04G01880 Oryza glumaepatula OGLUM04G01880 N 0.812
GSMUA_Achr11G02230_001 Musa acuminata GSMUA_Achr11G02230_001 N 0.812
BGIOSGA015622 Oryza indica BGIOSGA015622 N 0.812
OMERI04G02190 Oryza meridionalis OMERI04G02190 N 0.812
OBART04G02230 Oryza barthii OBART04G02230 N 0.812
OPUNC04G02200 Oryza punctata OPUNC04G02200 N 0.812
ONIVA08G18580 Oryza nivara ONIVA08G18580 N 0.812
ORUFI04G02970 Oryza rufipogon ORUFI04G02970 N 0.812
GLYMA13G39610 Glycine max GLYMA13G39610 N 0.811
Cucsa.200410 Cucumis sativus Cucsa.200410 N 0.811
Cla001892 Citrullus lanatus Cla001892 N 0.811
chr3.CM0070.360.nc Lotus japonicus chr3.CM0070.360.nc N 0.808
ORUFI08G26260 Oryza rufipogon ORUFI08G26260 N 0.802
OGLUM08G25260 Oryza glumaepatula OGLUM08G25260 N 0.802
29589.m001269 Ricinus communis 29589.m001269 N 0.801
VIT_06s0061g00780 Vitis vinifera VIT_06s0061g00780 N 0.793
AMTR_s00140p00061590 Amborella trichopoda AMTR_s00140p00061590 N 0.792
GLYMA12G08680 Glycine max GLYMA12G08680 N 0.782
OS08G0562300 Oryza sativa OS08G0562300 N 0.778
GLYMA11G19810 Glycine max GLYMA11G19810 N 0.778
BRADI3G12490 Brachypodium distachyon BRADI3G12490 N 0.778
BGIOSGA026480 Oryza indica BGIOSGA026480 N 0.778
OLONG_023180 Oryza longistaminata OLONG_023180 N 0.778
OMERI08G18590 Oryza meridionalis OMERI08G18590 N 0.778
Pavir.Fa00049 Panicum virgatum Pavir.Fa00049 N 0.778
ORGLA08G0191700 Oryza glaberrima ORGLA08G0191700 N 0.778
Pavir.Fb02219 Panicum virgatum Pavir.Fb02219 N 0.778
TRIUR3_12142 Triticum urartu TRIUR3_12142 N 0.778
Sb07g023890 Sorghum bicolor Sb07g023890 N 0.768
LPERR08G20460 Leersia perrieri LPERR08G20460 N 0.768
OB08G30610 Oryza brachyantha OB08G30610 N 0.768
OPUNC08G21710 Oryza punctata OPUNC08G21710 N 0.768
Si013894m.g Setaria italica Si013894m.g N 0.768
Aquca_009_01096 Aquilegia coerulea Aquca_009_01096 N 0.763