CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400009234
(
Solanum tuberosum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
PGSC0003DMG400009234
T125809_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.817
0.933
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.817
0.933
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400023880
C2H2 ZF
348
370
YTCSRCNIKKFSVIADLKTHEKH
PGSC0003DMT400023880
C2H2 ZF
369
400
KHCGKDKWLCSCGTTFSRKDKLFGHISLFQGH
PGSC0003DMT400023881
C2H2 ZF
348
370
YTCSRCNIKKFSVIADLKTHEKH
PGSC0003DMT400023881
C2H2 ZF
369
400
KHCGKDKWLCSCGTTFSRKDKLFGHISLFQGH
Links
Other
C2H2 ZF
family TFs
Other
Solanum tuberosum
TFs
73 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy