PGSC0003DMG400009234 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400009234 T125809_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY

RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.817 0.933
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN

NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.817 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400023880 C2H2 ZF 348 370
PGSC0003DMT400023880 C2H2 ZF 369 400
PGSC0003DMT400023881 C2H2 ZF 348 370
PGSC0003DMT400023881 C2H2 ZF 369 400

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA004701 Oryza indica BGIOSGA004701 N 0.000
F775_22564 Aegilops tauschii F775_22564 I 0.000
GRMZM2G029292 Zea mays GRMZM2G029292 I 0.000
GRMZM2G382350 Zea mays GRMZM2G382350 I 0.000
LPERR01G30470 Leersia perrieri LPERR01G30470 N 0.000
MLOC_6114 Hordeum vulgare MLOC_6114 I 0.000
OB01G44130 Oryza brachyantha OB01G44130 I 0.000
OBART01G35280 Oryza barthii OBART01G35280 N 0.000
OGLUM01G39350 Oryza glumaepatula OGLUM01G39350 N 0.000
OLONG_000628 Oryza longistaminata OLONG_000628 N 0.000
OMERI01G32440 Oryza meridionalis OMERI01G32440 N 0.000
OPUNC01G34260 Oryza punctata OPUNC01G34260 N 0.000
ORGLA01G0291600 Oryza glaberrima ORGLA01G0291600 N 0.000
ORUFI01G38630 Oryza rufipogon ORUFI01G38630 N 0.000
OS01G0820400 Oryza sativa OS01G0820400 N 0.000
Pavir.Eb03559 Panicum virgatum Pavir.Eb03559 I 0.000
Pavir.J31756 Panicum virgatum Pavir.J31756 I 0.000
Sb03g038170 Sorghum bicolor Sb03g038170 I 0.000
Si004791m.g Setaria italica Si004791m.g I 0.000
Traes_3B_8B0D448D8 Triticum aestivum Traes_3B_8B0D448D8 I 0.000
TRIUR3_27575 Triticum urartu TRIUR3_27575 I 0.000