PGSC0003DMG400009234 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400009234 T125809_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY

RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.817 0.933
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN

NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.817 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400023880 C2H2 ZF 348 370
PGSC0003DMT400023880 C2H2 ZF 369 400
PGSC0003DMT400023881 C2H2 ZF 348 370
PGSC0003DMT400023881 C2H2 ZF 369 400

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
STOP1 Arabidopsis thaliana AT1G34370 D 0.817
PDK_20s1338731g001 Phoenix dactylifera PDK_20s1338731g001 I 0.768
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.817
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.811
mgf000060m Mimulus guttatus mgf000060m I 0.817
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.764
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.817
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.817
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.817
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I 0.798
Pm022201 Prunus mume Pm022201 I 0.817
Cla016623 Citrullus lanatus Cla016623 I 0.811
Ca_04300 Cicer arietinum Ca_04300 I 0.817
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.817
TRIUR3_13796 Triticum urartu TRIUR3_13796 I 0.793
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I 0.793
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I 0.793
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I 0.793
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I 0.793
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.817
PK23301.1 Cannabis sativa PK23301.1 I 0.817
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.817
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.788
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.788
Pavir.J14096 Panicum virgatum Pavir.J14096 I 0.793
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.817
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.817
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I 0.793
MDP0000807856 Malus domestica MDP0000807856 I 0.817
MDP0000551046 Malus domestica MDP0000551046 I 0.817
MDP0000453148 Malus domestica MDP0000453148 I 0.793
MDP0000199559 Malus domestica MDP0000199559 I 0.817
MDP0000141403 Malus domestica MDP0000141403 I 0.817
Lus10009435.g Linum usitatissimum Lus10009435.g I 0.769
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I 0.793
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.817
TCM_036719 Theobroma cacao TCM_036719 I 0.817
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.827
OB01G47470 Oryza brachyantha OB01G47470 I 0.793
MLOC_10987 Hordeum vulgare MLOC_10987 I 0.793
LPERR01G33350 Leersia perrieri LPERR01G33350 I 0.793
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.817
GSMUA_Achr10G15970_001 Musa acuminata GSMUA_Achr10G15970_001 I 0.759
GRMZM2G129428 Zea mays GRMZM2G129428 I 0.793
GRMZM2G075956 Zea mays GRMZM2G075956 I 0.793
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.788
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.788
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.788
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.817
F775_04088 Aegilops tauschii F775_04088 I 0.793
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I 0.793
Bra040971 Brassica rapa Bra040971 I 0.793
Bo8g027000 Brassica oleracea Bo8g027000 I 0.817
BGIOSGA004888 Oryza indica BGIOSGA004888 I 0.793
OBART01G38810 Oryza barthii OBART01G38810 I 0.793
OLONG_020555 Oryza longistaminata OLONG_020555 I 0.793
Solyc06g065440.1 Solanum lycopersicum Solyc06g065440.1 I 0.784
Si001053m.g Setaria italica Si001053m.g I 0.793
SELMODRAFT_68340 Selaginella moellendorffii SELMODRAFT_68340 I 0.772
SELMODRAFT_58361 Selaginella moellendorffii SELMODRAFT_58361 I 0.772
SELMODRAFT_58350 Selaginella moellendorffii SELMODRAFT_58350 I 0.773
SELMODRAFT_48272 Selaginella moellendorffii SELMODRAFT_48272 I 0.773
Sb03g041170 Sorghum bicolor Sb03g041170 I 0.793
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.817
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.788
PGSC0003DMG400026081 Solanum tuberosum PGSC0003DMG400026081 I 0.784
OS01G0871200 Oryza sativa OS01G0871200 I 0.793
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I 0.793
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I 0.793
OPUNC01G37530 Oryza punctata OPUNC01G37530 I 0.793
ONIVA01G43630 Oryza nivara ONIVA01G43630 I 0.793
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.764