PGSC0003DMG400015558 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400015558 T125826_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.775 0.739
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN

NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.775 0.739
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.757 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400040207 C2H2 ZF 40 62
PGSC0003DMT400040207 C2H2 ZF 83 105

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

245 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc11g073060.1 Solanum lycopersicum Solyc11g073060.1 I 0.817
Eucgr.B02397 Eucalyptus grandis Eucgr.B02397 I 0.806
Eucgr.B02398 Eucalyptus grandis Eucgr.B02398 I 0.790
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.783
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.783
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.783
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.783
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.783
evm.TU.supercontig_163.32 Carica papaya evm.TU.supercontig_163.32 I 0.782
Ciclev10029464m.g Citrus clementina Ciclev10029464m.g I 0.781
TCM_041899 Theobroma cacao TCM_041899 I 0.781
Gorai.013G265200 Gossypium raimondii Gorai.013G265200 I 0.781
orange1.1g031430m.g Citrus sinensis orange1.1g031430m.g I 0.781
Gorai.003G136200 Gossypium raimondii Gorai.003G136200 I 0.781
ZAT11 Arabidopsis thaliana AT2G37430 I 0.781
Carubv10018114m.g Capsella rubella Carubv10018114m.g I 0.780
cassava16287.m1 Manihot esculenta cassava16287.m1 I 0.780
Bo00576s170 Brassica oleracea Bo00576s170 I 0.780
Eucgr.B02391 Eucalyptus grandis Eucgr.B02391 I 0.780
Eucgr.B02390 Eucalyptus grandis Eucgr.B02390 I 0.780
Eucgr.B02392 Eucalyptus grandis Eucgr.B02392 I 0.780
Eucgr.B02395 Eucalyptus grandis Eucgr.B02395 I 0.780
Cagra.0612s0086 Capsella grandiflora Cagra.0612s0086 I 0.780
cassava42054.valid.m1 Manihot esculenta cassava42054.valid.m1 I 0.780
29154.m000218 Ricinus communis 29154.m000218 I 0.780
Bra039806 Brassica rapa Bra039806 I 0.780
MDP0000237150 Malus domestica MDP0000237150 I 0.780
Bra003148 Brassica rapa Bra003148 I 0.780
Bostr.11793s0034 Boechera stricta Bostr.11793s0034 I 0.780
Eucgr.B02399 Eucalyptus grandis Eucgr.B02399 I 0.777
scaffold_401325.1 Arabidopsis lyrata scaffold_401325.1 I 0.776
Bra035678 Brassica rapa Bra035678 I 0.776
Thhalv10017375m.g Eutrema salsugineum Thhalv10017375m.g I 0.776
Bostr.27991s0045 Boechera stricta Bostr.27991s0045 I 0.776
Bo4g166690 Brassica oleracea Bo4g166690 I 0.776
Bo4g069230 Brassica oleracea Bo4g069230 I 0.776
Cagra.8274s0001 Capsella grandiflora Cagra.8274s0001 I 0.776
Carubv10024179m.g Capsella rubella Carubv10024179m.g I 0.776
Bra011931 Brassica rapa Bra011931 I 0.776
AT2G28710 Arabidopsis thaliana AT2G28710 I 0.776
AT3G53600 Arabidopsis thaliana AT3G53600 D 0.775
fgenesh2_kg.5__1736__AT3G53600.1 Arabidopsis lyrata fgenesh2_kg.5__1736__AT3G53600.1 I 0.775
gene13962-v1.0-hybrid Fragaria vesca gene13962-v1.0-hybrid I 0.775
gene13959-v1.0-hybrid Fragaria vesca gene13959-v1.0-hybrid I 0.775
gene28452-v1.0-hybrid Fragaria vesca gene28452-v1.0-hybrid I 0.775
Eucgr.L02150 Eucalyptus grandis Eucgr.L02150 I 0.775
Bra030981 Brassica rapa Bra030981 I 0.774
Bo6g067580 Brassica oleracea Bo6g067580 I 0.774
GSMUA_Achr5G28550_001 Musa acuminata GSMUA_Achr5G28550_001 I 0.774
Thhalv10010956m.g Eutrema salsugineum Thhalv10010956m.g I 0.774
F775_52353 Aegilops tauschii F775_52353 I 0.769
VIT_06s0009g02470 Vitis vinifera VIT_06s0009g02470 I 0.769
GSMUA_Achr11G21920_001 Musa acuminata GSMUA_Achr11G21920_001 I 0.767
GSMUA_Achr1G06720_001 Musa acuminata GSMUA_Achr1G06720_001 I 0.767
GSMUA_Achr11G02250_001 Musa acuminata GSMUA_Achr11G02250_001 I 0.767
GSMUA_Achr10G06730_001 Musa acuminata GSMUA_Achr10G06730_001 I 0.767
Eucgr.A01233 Eucalyptus grandis Eucgr.A01233 I 0.766
GSMUA_Achr11G23970_001 Musa acuminata GSMUA_Achr11G23970_001 I 0.766
Pavir.J00894 Panicum virgatum Pavir.J00894 I 0.763
Pavir.Ia00292 Panicum virgatum Pavir.Ia00292 I 0.763
F775_22659 Aegilops tauschii F775_22659 I 0.763
Pavir.J04850 Panicum virgatum Pavir.J04850 I 0.762
Traes_5BL_8DB8274DB1 Triticum aestivum Traes_5BL_8DB8274DB1 I 0.761
OMERI03G35880 Oryza meridionalis OMERI03G35880 I 0.761
Si008395m.g Setaria italica Si008395m.g I 0.761
PGSC0003DMG401030312 Solanum tuberosum PGSC0003DMG401030312 I 0.761
OGLUM03G38910 Oryza glumaepatula OGLUM03G38910 I 0.761
BRADI1G03790 Brachypodium distachyon BRADI1G03790 I 0.761
Traes_5BL_6F2D345E2 Triticum aestivum Traes_5BL_6F2D345E2 I 0.761
ORGLA03G0358200 Oryza glaberrima ORGLA03G0358200 I 0.761
F775_18609 Aegilops tauschii F775_18609 I 0.761
F775_18608 Aegilops tauschii F775_18608 I 0.761
ONIVA03G40720 Oryza nivara ONIVA03G40720 I 0.761
PGSC0003DMG400039582 Solanum tuberosum PGSC0003DMG400039582 I 0.761
Solyc06g075780.1 Solanum lycopersicum Solyc06g075780.1 I 0.761
Sb01g003280 Sorghum bicolor Sb01g003280 I 0.761
Si037672m.g Setaria italica Si037672m.g I 0.761
Traes_5DL_50E35B4F3 Triticum aestivum Traes_5DL_50E35B4F3 I 0.761
OS03G0820400 Oryza sativa OS03G0820400 I 0.761
MLOC_63032 Hordeum vulgare MLOC_63032 I 0.761
LPERR03G33240 Leersia perrieri LPERR03G33240 I 0.761
F775_30895 Aegilops tauschii F775_30895 I 0.761
PGSC0003DMG400008327 Solanum tuberosum PGSC0003DMG400008327 I 0.761
F775_30896 Aegilops tauschii F775_30896 I 0.761
Traes_5DL_4B4927090 Triticum aestivum Traes_5DL_4B4927090 I 0.761
TRIUR3_01065 Triticum urartu TRIUR3_01065 I 0.761
TRIUR3_01063 Triticum urartu TRIUR3_01063 I 0.761
Sb10g031270 Sorghum bicolor Sb10g031270 I 0.761
OB03G46010 Oryza brachyantha OB03G46010 I 0.761
OBART03G39050 Oryza barthii OBART03G39050 I 0.761
TRIUR3_01060 Triticum urartu TRIUR3_01060 I 0.761
BGIOSGA013832 Oryza indica BGIOSGA013832 I 0.761
GRMZM2G307402 Zea mays GRMZM2G307402 I 0.760
SapurV1A.0008s0970 Salix purpurea SapurV1A.0008s0970 I 0.759
POPTR_0001s24250 Populus trichocarpa POPTR_0001s24250 I 0.759
Traes_5BL_9C687EE11 Triticum aestivum Traes_5BL_9C687EE11 I 0.759
TRIUR3_15912 Triticum urartu TRIUR3_15912 I 0.759
Traes_5DL_90F570468 Triticum aestivum Traes_5DL_90F570468 I 0.759
28637.m000203 Ricinus communis 28637.m000203 I 0.759
cassava35212.m1 Manihot esculenta cassava35212.m1 I 0.759
cassava8924.m1 Manihot esculenta cassava8924.m1 I 0.759
Traes_5DL_4E890ABF3 Triticum aestivum Traes_5DL_4E890ABF3 I 0.759
Traes_5BL_F74D668D9 Triticum aestivum Traes_5BL_F74D668D9 I 0.759
Traes_5BL_630A8A142 Triticum aestivum Traes_5BL_630A8A142 I 0.759
Traes_5BL_63AE36D3A Triticum aestivum Traes_5BL_63AE36D3A I 0.759
Traes_5BL_BB99746DD Triticum aestivum Traes_5BL_BB99746DD I 0.759
Traes_5BL_D53A846BE Triticum aestivum Traes_5BL_D53A846BE I 0.759
Traes_5BL_3A9D3CEEF Triticum aestivum Traes_5BL_3A9D3CEEF I 0.759
POPTR_1833s00200 Populus trichocarpa POPTR_1833s00200 I 0.759
F775_30269 Aegilops tauschii F775_30269 I 0.759
MTR_7g100100 Medicago truncatula MTR_7g100100 I 0.759
MLOC_76196 Hordeum vulgare MLOC_76196 I 0.759
F775_52290 Aegilops tauschii F775_52290 I 0.759
LPERR03G33230 Leersia perrieri LPERR03G33230 I 0.759
F775_18611 Aegilops tauschii F775_18611 I 0.759
ONIVA03G40710 Oryza nivara ONIVA03G40710 I 0.759
MLOC_19822 Hordeum vulgare MLOC_19822 I 0.759
OMERI03G35870 Oryza meridionalis OMERI03G35870 I 0.759
ORGLA03G0358100 Oryza glaberrima ORGLA03G0358100 I 0.759
BGIOSGA013831 Oryza indica BGIOSGA013831 I 0.759
OS03G0820300 Oryza sativa OS03G0820300 I 0.759
OGLUM03G38900 Oryza glumaepatula OGLUM03G38900 I 0.759
ORUFI03G40740 Oryza rufipogon ORUFI03G40740 I 0.759
GLYMA03G33060 Glycine max GLYMA03G33060 I 0.758
GLYMA03G33070 Glycine max GLYMA03G33070 I 0.758
GLYMA03G33050 Glycine max GLYMA03G33050 I 0.758
LjSGA_020980.2 Lotus japonicus LjSGA_020980.2 I 0.758
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.758
MTR_1g067640 Medicago truncatula MTR_1g067640 I 0.758
GLYMA19G35740 Glycine max GLYMA19G35740 I 0.758
GLYMA10G05210 Glycine max GLYMA10G05210 I 0.758
GLYMA13G19570 Glycine max GLYMA13G19570 I 0.758
GSMUA_Achr9G03210_001 Musa acuminata GSMUA_Achr9G03210_001 I 0.758
gene18204-v1.0-hybrid Fragaria vesca gene18204-v1.0-hybrid I 0.758
GLYMA19G35770 Glycine max GLYMA19G35770 I 0.758
MTR_1g067650 Medicago truncatula MTR_1g067650 I 0.758
Cagra.0666s0001 Capsella grandiflora Cagra.0666s0001 I 0.757
Traes_5DL_F269EF70D Triticum aestivum Traes_5DL_F269EF70D I 0.757
GSMUA_AchrUn_randomG07580_001 Musa acuminata GSMUA_AchrUn_randomG07580_001 I 0.757
Carubv10024141m.g Capsella rubella Carubv10024141m.g I 0.757
Bra005197 Brassica rapa Bra005197 I 0.757
AT5G03510 Arabidopsis thaliana AT5G03510 D 0.757
POPTR_0009s03280 Populus trichocarpa POPTR_0009s03280 I 0.757
evm.TU.supercontig_190.30 Carica papaya evm.TU.supercontig_190.30 I 0.756
Eucgr.B02394 Eucalyptus grandis Eucgr.B02394 I 0.756
Ciclev10013311m.g Citrus clementina Ciclev10013311m.g I 0.756
GRMZM2G048154 Zea mays GRMZM2G048154 I 0.756
GRMZM2G112251 Zea mays GRMZM2G112251 I 0.756
GRMZM2G112799 Zea mays GRMZM2G112799 I 0.756
GLYMA20G23180 Glycine max GLYMA20G23180 I 0.756
GLYMA18G52410 Glycine max GLYMA18G52410 I 0.756
evm.TU.contig_30912.1 Carica papaya evm.TU.contig_30912.1 I 0.756
Eucgr.G02910 Eucalyptus grandis Eucgr.G02910 I 0.756
GLYMA10G43630 Glycine max GLYMA10G43630 I 0.756
GLYMA02G10490 Glycine max GLYMA02G10490 I 0.756
Gorai.006G104800 Gossypium raimondii Gorai.006G104800 I 0.756
BGIOSGA010987 Oryza indica BGIOSGA010987 I 0.756
SapurV1A.0038s0750 Salix purpurea SapurV1A.0038s0750 I 0.756
Pavir.J14338 Panicum virgatum Pavir.J14338 I 0.756
BGIOSGA018935 Oryza indica BGIOSGA018935 I 0.756
Pavir.Ia03651 Panicum virgatum Pavir.Ia03651 I 0.756
Pavir.Ib01297 Panicum virgatum Pavir.Ib01297 I 0.756
SapurV1A.0040s0050 Salix purpurea SapurV1A.0040s0050 I 0.756
SapurV1A.0095s0590 Salix purpurea SapurV1A.0095s0590 I 0.756
PK27255.1 Cannabis sativa PK27255.1 I 0.756
chr5.CM0180.20.nc Lotus japonicus chr5.CM0180.20.nc I 0.756
Thhalv10017303m.g Eutrema salsugineum Thhalv10017303m.g I 0.756
BGIOSGA004768 Oryza indica BGIOSGA004768 I 0.756
SapurV1A.4260s0020 Salix purpurea SapurV1A.4260s0020 I 0.756
Pavir.Eb03660 Panicum virgatum Pavir.Eb03660 I 0.756
Pavir.Ca00650 Panicum virgatum Pavir.Ca00650 I 0.756
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.756
Gorai.011G254200 Gossypium raimondii Gorai.011G254200 I 0.756
Gorai.006G176100 Gossypium raimondii Gorai.006G176100 I 0.756
Gorai.006G176000 Gossypium raimondii Gorai.006G176000 I 0.756
F775_52535 Aegilops tauschii F775_52535 I 0.756
gene18205-v1.0-hybrid Fragaria vesca gene18205-v1.0-hybrid I 0.756
Gorai.011G254300 Gossypium raimondii Gorai.011G254300 I 0.756
Gorai.012G006900 Gossypium raimondii Gorai.012G006900 I 0.756
BRADI2G54500 Brachypodium distachyon BRADI2G54500 I 0.756
orange1.1g031966m.g Citrus sinensis orange1.1g031966m.g I 0.756
F775_17660 Aegilops tauschii F775_17660 N 0.756
Lus10030330.g Linum usitatissimum Lus10030330.g I 0.756
Gorai.013G023300 Gossypium raimondii Gorai.013G023300 I 0.756
fgenesh2_kg.4__1796__AT2G37430.1 Arabidopsis lyrata fgenesh2_kg.4__1796__AT2G37430.1 I 0.756
Cucsa.165460 Cucumis sativus Cucsa.165460 I 0.756
Solyc05g054650.1 Solanum lycopersicum Solyc05g054650.1 I 0.756
Solyc05g054660.1 Solanum lycopersicum Solyc05g054660.1 I 0.756
OPUNC03G12220 Oryza punctata OPUNC03G12220 I 0.756
Si037660m.g Setaria italica Si037660m.g I 0.756
OPUNC05G00940 Oryza punctata OPUNC05G00940 I 0.756
Si023353m.g Setaria italica Si023353m.g I 0.756
OPUNC01G35470 Oryza punctata OPUNC01G35470 I 0.756
OPUNC01G35440 Oryza punctata OPUNC01G35440 I 0.756
Traes_1DS_CE96E8BF0 Triticum aestivum Traes_1DS_CE96E8BF0 I 0.756
TRAES3BF127400030CFD_g Triticum aestivum TRAES3BF127400030CFD_g I 0.756
Traes_1BS_22E395F75 Triticum aestivum Traes_1BS_22E395F75 I 0.756
Traes_1AS_B282BFB83 Triticum aestivum Traes_1AS_B282BFB83 I 0.756
ONIVA05G01090 Oryza nivara ONIVA05G01090 I 0.756
ORGLA01G0304700 Oryza glaberrima ORGLA01G0304700 I 0.756
ORGLA03G0122200 Oryza glaberrima ORGLA03G0122200 I 0.756
ORUFI05G01070 Oryza rufipogon ORUFI05G01070 I 0.756
ORUFI03G13310 Oryza rufipogon ORUFI03G13310 I 0.756
PGSC0003DMG400023547 Solanum tuberosum PGSC0003DMG400023547 I 0.756
PGSC0003DMG400023518 Solanum tuberosum PGSC0003DMG400023518 I 0.756
OS03G0279700 Oryza sativa OS03G0279700 I 0.756
OS01G0839100 Oryza sativa OS01G0839100 I 0.756
POPTR_0006s12340 Populus trichocarpa POPTR_0006s12340 I 0.756
POPTR_0008s05110 Populus trichocarpa POPTR_0008s05110 I 0.756
Sb03g039270 Sorghum bicolor Sb03g039270 I 0.756
Sb09g001560 Sorghum bicolor Sb09g001560 I 0.756
PRUPE_ppa022066mg Prunus persica PRUPE_ppa022066mg I 0.756
ORGLA05G0010800 Oryza glaberrima ORGLA05G0010800 I 0.756
POPTR_0010s21650 Populus trichocarpa POPTR_0010s21650 I 0.756
Traes_4AS_D4763E468 Triticum aestivum Traes_4AS_D4763E468 I 0.756
ONIVA01G41740 Oryza nivara ONIVA01G41740 I 0.756
cassava9455.m1 Manihot esculenta cassava9455.m1 I 0.756
OS05G0114400 Oryza sativa OS05G0114400 I 0.756
LPERR01G31500 Leersia perrieri LPERR01G31500 I 0.756
LPERR03G11200 Leersia perrieri LPERR03G11200 I 0.756
29585.m000611 Ricinus communis 29585.m000611 I 0.756
cassava15802.m1 Manihot esculenta cassava15802.m1 I 0.756
Cucsa.379890 Cucumis sativus Cucsa.379890 I 0.756
mgf023249m Mimulus guttatus mgf023249m I 0.756
Bostr.23794s0343 Boechera stricta Bostr.23794s0343 I 0.756
GSMUA_Achr10G03700_001 Musa acuminata GSMUA_Achr10G03700_001 I 0.756
GSMUA_Achr10G13540_001 Musa acuminata GSMUA_Achr10G13540_001 I 0.756
Aquca_027_00274 Aquilegia coerulea Aquca_027_00274 I 0.756
Aquca_010_00704 Aquilegia coerulea Aquca_010_00704 I 0.756
LPERR05G01000 Leersia perrieri LPERR05G01000 I 0.756
Pm002762 Prunus mume Pm002762 I 0.756
OGLUM05G01060 Oryza glumaepatula OGLUM05G01060 I 0.756
OGLUM03G12700 Oryza glumaepatula OGLUM03G12700 I 0.756
OMERI01G33710 Oryza meridionalis OMERI01G33710 I 0.756
OMERI03G11850 Oryza meridionalis OMERI03G11850 I 0.756
ONIVA01G18540 Oryza nivara ONIVA01G18540 I 0.756
OMERI05G01120 Oryza meridionalis OMERI05G01120 I 0.756
OGLUM01G40530 Oryza glumaepatula OGLUM01G40530 I 0.756
OBART05G01050 Oryza barthii OBART05G01050 I 0.756
Cla004091 Citrullus lanatus Cla004091 I 0.756
Cla013490 Citrullus lanatus Cla013490 I 0.756
VIT_13s0019g00480 Vitis vinifera VIT_13s0019g00480 I 0.756
VIT_06s0004g04180 Vitis vinifera VIT_06s0004g04180 I 0.756
MTR_7g023560 Medicago truncatula MTR_7g023560 I 0.756
GRMZM2G376061 Zea mays GRMZM2G376061 I 0.756