PGSC0003DMG400026081 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400026081 T125839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY

RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.774 0.889
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN

NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.774 0.889
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400067091 C2H2 ZF 269 291
PGSC0003DMT400067091 C2H2 ZF 290 321
PGSC0003DMT400067092 C2H2 ZF 269 291
PGSC0003DMT400067092 C2H2 ZF 290 321
PGSC0003DMT400067093 C2H2 ZF 269 291
PGSC0003DMT400067093 C2H2 ZF 290 321

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

Invalid Input OrderBy

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action