PGSC0003DMG400028275 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400028275 T125842_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.791 0.818
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.789 0.727
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.789 0.705
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.773 0.795
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.771 0.773
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT

AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.771 0.773
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN

NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.771 0.773
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.766 0.682
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN

NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.756 0.727
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH

DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.756 0.727
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400072661 C2H2 ZF 81 103
PGSC0003DMT400072661 C2H2 ZF 141 161

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.802
TCM_034720 Theobroma cacao TCM_034720 I 0.796
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.796
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.796
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.796
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.796
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.796
TCM_007214 Theobroma cacao TCM_007214 I 0.796
Bra022436 Brassica rapa Bra022436 I 0.796
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.796
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.796
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.796
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.796
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.796
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.796
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.796
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.796
Ca_18364 Cicer arietinum Ca_18364 I 0.796
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.796
Pm005390 Prunus mume Pm005390 I 0.796
Pm021284 Prunus mume Pm021284 I 0.796
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.796
Ca_01586 Cicer arietinum Ca_01586 I 0.796
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.796
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.796
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.796
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.796
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.796
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.796
Bra038219 Brassica rapa Bra038219 I 0.796
Bo1g113530 Brassica oleracea Bo1g113530 I 0.796
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.796
Bo5g113850 Brassica oleracea Bo5g113850 I 0.796
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.796
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.796
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.796
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.796
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.796
PK10188.1 Cannabis sativa PK10188.1 I 0.796
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.796
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.796
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.796
MDP0000762756 Malus domestica MDP0000762756 I 0.796
MDP0000198015 Malus domestica MDP0000198015 I 0.796
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.796
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.796
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.796
MDP0000573176 Malus domestica MDP0000573176 I 0.796
MDP0000319225 Malus domestica MDP0000319225 I 0.796
mgf006006m Mimulus guttatus mgf006006m I 0.795
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.795
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.795
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.792
28152.m000908 Ricinus communis 28152.m000908 I 0.791
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.791
AZF2 Arabidopsis thaliana AT3G19580 D 0.791
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.791
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.791
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.791
30170.m013751 Ricinus communis 30170.m013751 I 0.790
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.790
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.790
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.789
ZAT4 Arabidopsis thaliana AT2G45120 D 0.789
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.789
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.789
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.789
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.789
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.789
ZAT9 Arabidopsis thaliana AT3G60580 D 0.789
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.789
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.789
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.789
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.784
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.783
Ca_23672 Cicer arietinum Ca_23672 I 0.783
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.783
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.783
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.783
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.783
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.783
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.783
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.783
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.783
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.783
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.783
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.783
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.783
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.782
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.773
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.773
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.773
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.773
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.773
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.773
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.773
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.773
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.773
Bo9g181170 Brassica oleracea Bo9g181170 I 0.773
ZAT6 Arabidopsis thaliana AT5G04340 D 0.773
Bra009464 Brassica rapa Bra009464 I 0.773
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.772
Bra010922 Brassica rapa Bra010922 I 0.771
Bo3g142840 Brassica oleracea Bo3g142840 I 0.771
Bo7g048650 Brassica oleracea Bo7g048650 I 0.771
ZAT10 Arabidopsis thaliana AT1G27730 D 0.771
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.771
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.771
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.767
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.767
Bra033666 Brassica rapa Bra033666 I 0.767
Bo7g065200 Brassica oleracea Bo7g065200 I 0.767
Ca_05641 Cicer arietinum Ca_05641 I 0.767
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.767
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.767
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.766
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.766
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.766
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.766
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.766
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.766
Bra018817 Brassica rapa Bra018817 I 0.766
OS12G0583700 Oryza sativa OS12G0583700 I 0.766
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.766
TCM_000780 Theobroma cacao TCM_000780 I 0.766
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.766
Si023013m.g Setaria italica Si023013m.g I 0.766
ZAT1 Arabidopsis thaliana AT1G02030 D 0.766
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.766
Bra040325 Brassica rapa Bra040325 I 0.765
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.765
Bo6g077190 Brassica oleracea Bo6g077190 I 0.765
Bo4g104940 Brassica oleracea Bo4g104940 I 0.765
Bo3g037560 Brassica oleracea Bo3g037560 I 0.765
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.765
Bo4g195370 Brassica oleracea Bo4g195370 I 0.765
Bra014483 Brassica rapa Bra014483 I 0.765
Bra007545 Brassica rapa Bra007545 I 0.765
Bra003422 Brassica rapa Bra003422 I 0.765
Bra000372 Brassica rapa Bra000372 I 0.765
Bo8g095300 Brassica oleracea Bo8g095300 I 0.765
29661.m000908 Ricinus communis 29661.m000908 I 0.764
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.763
OB03G42170 Oryza brachyantha OB03G42170 I 0.763
Bra029985 Brassica rapa Bra029985 I 0.761
AZF3 Arabidopsis thaliana AT5G43170 I 0.761
Bo1g081350 Brassica oleracea Bo1g081350 I 0.761
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.761
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.761
Bra012914 Brassica rapa Bra012914 I 0.761
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.760
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.760
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.760
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.760
30147.m014242 Ricinus communis 30147.m014242 I 0.760
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.760
Si010615m.g Setaria italica Si010615m.g I 0.759
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.759
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.759
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.759
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.759
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.759
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.759
30174.m008818 Ricinus communis 30174.m008818 I 0.759
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.759
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.759
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.759
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.759
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.759
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.759
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.759
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.759
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.759
Cla001400 Citrullus lanatus Cla001400 I 0.759
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.759
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.759
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.759
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.759
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.759
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.759
OS04G0552700 Oryza sativa OS04G0552700 I 0.759
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.759
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.759
OS02G0659500 Oryza sativa OS02G0659500 I 0.759
OBART02G26700 Oryza barthii OBART02G26700 I 0.759
OBART04G21020 Oryza barthii OBART04G21020 I 0.759
OB04G28040 Oryza brachyantha OB04G28040 I 0.759
mgf017082m Mimulus guttatus mgf017082m I 0.759
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.759
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.759
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.758
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.758
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.758
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.758
mgf021094m Mimulus guttatus mgf021094m I 0.758
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.758
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.757
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.757
AZF1 Arabidopsis thaliana AT5G67450 D 0.756
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.756
Bo9g019120 Brassica oleracea Bo9g019120 I 0.756
Bra031834 Brassica rapa Bra031834 I 0.756
Bo2g168030 Brassica oleracea Bo2g168030 I 0.756
Bra037845 Brassica rapa Bra037845 I 0.756