PGSC0003DMG400030803 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400030803 T125846_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400079144 C2H2 ZF 407 428
PGSC0003DMT400079144 C2H2 ZF 427 453

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.827
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.817
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.808
mgf022981m Mimulus guttatus mgf022981m N 0.803
mgf022319m Mimulus guttatus mgf022319m N 0.794
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.793
Cla000184 Citrullus lanatus Cla000184 N 0.787
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.787
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.784
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.784
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.784
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.784
TCM_034881 Theobroma cacao TCM_034881 N 0.784
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.782
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.782
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.782
Bo5g081360 Brassica oleracea Bo5g081360 N 0.782
Bo5g008880 Brassica oleracea Bo5g008880 N 0.782
WIP3 Arabidopsis thaliana AT1G08290 N 0.782
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N 0.782
Bo8g112550 Brassica oleracea Bo8g112550 N 0.782
Bra031621 Brassica rapa Bra031621 N 0.782
Bra018638 Brassica rapa Bra018638 N 0.782
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.782
MDP0000573922 Malus domestica MDP0000573922 N 0.781
Ca_27078 Cicer arietinum Ca_27078 N 0.778
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.778
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.778
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.778
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.778
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.778
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.778
29908.m006047 Ricinus communis 29908.m006047 N 0.778
TT1 Vitis vinifera VIT_18s0001g05860 N 0.778
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.774
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.774
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.774
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.774
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.774
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.774
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.774
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.774
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.774
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.774
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.774
Pm001374 Prunus mume Pm001374 N 0.774
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.774
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.774
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.774
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.774
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.774
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.774
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.774
TCM_041441 Theobroma cacao TCM_041441 N 0.774
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.774
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.774
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.774
MDP0000300013 Malus domestica MDP0000300013 N 0.774
MDP0000131949 Malus domestica MDP0000131949 N 0.774
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.774
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.774
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.774
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.774
Ca_07051 Cicer arietinum Ca_07051 N 0.774
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.774
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.774
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.774
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.774
30055.m001542 Ricinus communis 30055.m001542 N 0.774
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.774
OBART09G03640 Oryza barthii OBART09G03640 N 0.772
OB05G26090 Oryza brachyantha OB05G26090 N 0.772
OGLUM09G04400 Oryza glumaepatula OGLUM09G04400 N 0.772
GRMZM2G000836 Zea mays GRMZM2G000836 N 0.772
BGIOSGA030081 Oryza indica BGIOSGA030081 N 0.772
BRADI2G23870 Brachypodium distachyon BRADI2G23870 N 0.772
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.772
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N 0.772
OMERI09G02890 Oryza meridionalis OMERI09G02890 N 0.772
OPUNC09G03280 Oryza punctata OPUNC09G03280 N 0.772
ORGLA09G0176200 Oryza glaberrima ORGLA09G0176200 N 0.772
ONIVA02G14580 Oryza nivara ONIVA02G14580 N 0.772
ORUFI09G04060 Oryza rufipogon ORUFI09G04060 N 0.772
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.770
30061.m000294 Ricinus communis 30061.m000294 N 0.770
Ca_16482 Cicer arietinum Ca_16482 N 0.769
TRIUR3_30537 Triticum urartu TRIUR3_30537 N 0.768
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.768
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N 0.768
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N 0.768
PK05257.1 Cannabis sativa PK05257.1 N 0.768
Sb02g020840 Sorghum bicolor Sb02g020840 N 0.768
LPERR09G03450 Leersia perrieri LPERR09G03450 N 0.768
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N 0.768
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N 0.768
OPUNC09G04260 Oryza punctata OPUNC09G04260 N 0.768
MLOC_54308 Hordeum vulgare MLOC_54308 N 0.768
OMERI09G03940 Oryza meridionalis OMERI09G03940 N 0.768
ONIVA08G08420 Oryza nivara ONIVA08G08420 N 0.768
GRMZM2G150011 Zea mays GRMZM2G150011 N 0.768
OS09G0307400 Oryza sativa OS09G0307400 N 0.768
Si030360m.g Setaria italica Si030360m.g N 0.768
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N 0.768
BGIOSGA030484 Oryza indica BGIOSGA030484 N 0.768
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N 0.768
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.766
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.764
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.764
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.764
OB08G26650 Oryza brachyantha OB08G26650 N 0.764
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.764
OBART08G19670 Oryza barthii OBART08G19670 N 0.764
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.764
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.764
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.764
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.764
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.764
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.764
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.764
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.764
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.764
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.764
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.764
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.764
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.764
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.764
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.764
OS09G0485600 Oryza sativa OS09G0485600 N 0.764
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.764
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.764
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.764
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.764
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.764
TCM_005892 Theobroma cacao TCM_005892 N 0.764
Si013819m.g Setaria italica Si013819m.g N 0.764
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.764
Cla015481 Citrullus lanatus Cla015481 N 0.764
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.764
OS08G0504000 Oryza sativa OS08G0504000 N 0.764
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.764
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.764
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.764
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.764
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.764
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.764
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.764
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.764
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N 0.762
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.759
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.759
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N 0.758
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.758
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.758
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.758
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.758
F775_14972 Aegilops tauschii F775_14972 N 0.758
Si029897m.g Setaria italica Si029897m.g N 0.758
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.758
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.758
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.758
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.758
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.758