CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400041467
(
Solanum tuberosum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
PGSC0003DMG400041467
T125853_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN
NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.807
0.848
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH
DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.799
0.739
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.799
0.717
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN
NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.792
0.826
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT
AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.792
0.826
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.792
0.826
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.788
0.826
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN
NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.776
0.696
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN
NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.772
0.761
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.772
0.761
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400091896
C2H2 ZF
59
81
YKCSVCGKCFGSYQALGGHKASH
PGSC0003DMT400091896
C2H2 ZF
106
128
HECTICHKTFPTGQALGGHKRRH
Links
Other
C2H2 ZF
family TFs
Other
Solanum tuberosum
TFs
226 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy