CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PHUM453610
(
Pediculus humanus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
PHUM453610
T126207_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sp1
M03682_2.00
Drosophila melanogaster
HNGCCACGCCCARK
MYTGGGCGTGGCND
SELEX
Nitta et al.(2015)
Sp1_1
0.823
0.986
Sp1
M06117_2.00
Drosophila melanogaster
DHYMCGCCCMY
RKGGGCGKRDH
B1H
Zhu et al.(2011)
Sp1_SANGER_5_FBgn0020378
0.823
0.986
Sp1
M06118_2.00
Drosophila melanogaster
NKHHMCGCCCMYNN
NNRKGGGCGKDDMN
B1H
Zhu et al.(2011)
Sp1_SOLEXA_2.5_FBgn0020378
0.823
0.986
SP8
M02898_2.00
Homo sapiens
VMCACBCCCMCH
DGKGGGVGTGKB
SELEX
Jolma et al.(2013)
SP8_1
0.810
0.971
SP8
M04517_2.00
Homo sapiens
NMCMCGCCCMYH
DRKGGGCGKGKN
SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX
0.810
0.971
SP8
M04518_2.00
Homo sapiens
RHCACGCCCMYH
DRKGGGCGTGDY
SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX
0.810
0.971
SP9
M04645_2.00
Homo sapiens
VMCMCGCCCMYH
DRKGGGCGKGKB
SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX
0.810
0.957
SP9
M04646_2.00
Homo sapiens
RYCACGCCCMYH
DRKGGGCGTGRY
SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX
0.810
0.957
Sp5
M09016_2.00
Mus musculus
CYCCKCCYHYHBCYYHBYYYHYHB
VDRDRRRVDRRGVDRDRGGMGGRG
Misc
Kulakovskiy et al.(2013)
SP5_MOUSE.H11MO.0.C
0.807
0.942
SP5
M10319_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP5_Q2
0.807
0.942
SP3
M02910_2.00
Homo sapiens
VCCMCRCCCMY
RKGGGYGKGGB
SELEX
Jolma et al.(2013)
SP3_1
0.774
0.884
SP3
M04558_2.00
Homo sapiens
NRCCACGCCCMYH
DRKGGGCGTGGYN
SELEX
Yin et al.(2017)
SP3_eDBD_HT-SELEX
0.774
0.884
SP3
M08920_2.00
Homo sapiens
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN
Misc
Kulakovskiy et al.(2013)
SP3_HUMAN.H11MO.0.B
0.774
0.884
SP3
M10263_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP3_Q3_01
0.774
0.884
SP3
M10264_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP3_Q3
0.774
0.884
SP3
M04559_2.00
Homo sapiens
NRCCMCGCCCMCH
DGKGGGCGKGGYN
SELEX
Yin et al.(2017)
SP3_eDBD_Methyl-HT-SELEX
0.774
0.884
Sp3
M08978_2.00
Mus musculus
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN
Misc
Kulakovskiy et al.(2013)
SP3_MOUSE.H11MO.0.B
0.762
0.884
Sp1
M00765_2.00
Mus musculus
NMCGCCCMY
RKGGGCGKN
PBM
Weirauch et al.(2013)
pTH0978
0.761
0.870
Sp1
M08963_2.00
Mus musculus
CCCBKCYCCKCCCCCNBCYCSBSC
GSVSGRGVNGGGGGMGGRGMVGGG
Misc
Kulakovskiy et al.(2013)
SP1_MOUSE.H11MO.0.A
0.761
0.870
Spps
M06159_2.00
Drosophila melanogaster
KWDRCCMCGCCCMBH
DVKGGGCGKGGYHWM
B1H
Zhu et al.(2011)
CG5669_SANGER_10_FBgn0039169
0.758
0.841
Spps
M06160_2.00
Drosophila melanogaster
BDDGCCMCGCCCMYN
NRKGGGCGKGGCHHV
B1H
Zhu et al.(2011)
CG5669_SOLEXA_5_FBgn0039169
0.758
0.841
SP1
M02921_2.00
Homo sapiens
RCCMCDCCCMH
DKGGGHGKGGY
SELEX
Jolma et al.(2013)
SP1_1
0.758
0.855
SP1
M04605_2.00
Homo sapiens
NWRRCCACGCCCMCH
DGKGGGCGTGGYYWN
SELEX
Yin et al.(2017)
SP1_eDBD_HT-SELEX
0.758
0.855
SP1
M08096_2.00
Homo sapiens
BYCCCKCCCCY
RGGGGMGGGRV
ChIP-seq
Mathelier et al.(2014)
MA0079.3
0.758
0.855
SP1
M08363_2.00
Homo sapiens
CCCHNBCYCCDCCCY
RGGGHGGRGVNDGGG
ChIP-seq
Schmitges et al.(2016)
P08047.MEME
0.758
0.855
SP1
M08938_2.00
Homo sapiens
BCSSSBCCHVGCCCCGCCCCYN
NRGGGGCGGGGCBDGGVSSSGV
Misc
Kulakovskiy et al.(2013)
SP1_HUMAN.H11MO.0.A
0.758
0.855
SP1
M10294_2.00
Homo sapiens
DSCMHGCCYH
DRGGCDKGSH
Transfac
Matys et al.(2006)
V$SP1_01
0.758
0.855
SP1
M10295_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_02
0.758
0.855
SP1
M10296_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_07
0.758
0.855
SP1
M10297_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_08
0.758
0.855
SP1
M10298_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_Q2_02
0.758
0.855
SP1
M10299_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_Q3
0.758
0.855
SP1
M10300_2.00
Homo sapiens
VVCCCCGCCCMBN
NVKGGGCGGGGBB
Transfac
Matys et al.(2006)
V$SP1_Q6
0.758
0.855
SP1
M04606_2.00
Homo sapiens
NWRGCCMCGCCCMYH
DRKGGGCGKGGCYWN
SELEX
Yin et al.(2017)
SP1_eDBD_Methyl-HT-SELEX
0.758
0.855
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM453610-PA
C2H2 ZF
290
314
HSCHIPGCGKVYGKTSHLKAHLRWH
PHUM453610-PA
C2H2 ZF
320
344
FVCNWLFCGKRFTRSDELQRHLRTH
PHUM453610-PA
C2H2 ZF
350
372
FACPICNKRFMRSDHLAKHVKTH
Links
Other
C2H2 ZF
family TFs
Other
Pediculus humanus
TFs
534 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30032.m000462
Ricinus communis
30032.m000462
N
0.000
Aquca_072_00063
Aquilegia coerulea
Aquca_072_00063
I
0.000
ARF31
Arabidopsis thaliana
AT2G36080
N
0.000
AT3G11580
Arabidopsis thaliana
AT3G11580
N
0.000
AT5G06250
Arabidopsis thaliana
AT5G06250
N
0.000
BGIOSGA011738
Oryza indica
BGIOSGA011738
N
0.000
BGIOSGA034469
Oryza indica
BGIOSGA034469
N
0.000
BGIOSGA036599
Oryza indica
BGIOSGA036599
N
0.000
Bo01079s020
Brassica oleracea
Bo01079s020
N
0.000
Bo3g003800
Brassica oleracea
Bo3g003800
N
0.000
Bo3g064320
Brassica oleracea
Bo3g064320
N
0.000
Bo4g035110
Brassica oleracea
Bo4g035110
N
0.000
Bo5g136360
Brassica oleracea
Bo5g136360
N
0.000
Bo9g176470
Brassica oleracea
Bo9g176470
N
0.000
Bostr.13129s0349
Boechera stricta
Bostr.13129s0349
N
0.000
Bostr.19424s1090
Boechera stricta
Bostr.19424s1090
N
0.000
Bostr.23794s0488
Boechera stricta
Bostr.23794s0488
N
0.000
Bra001411
Brassica rapa
Bra001411
N
0.000
Bra005301
Brassica rapa
Bra005301
N
0.000
Bra005886
Brassica rapa
Bra005886
N
0.000
Bra017262
Brassica rapa
Bra017262
N
0.000
Bra034828
Brassica rapa
Bra034828
N
0.000
BRADI4G25170
Brachypodium distachyon
BRADI4G25170
N
0.000
BRADI4G42167
Brachypodium distachyon
BRADI4G42167
N
0.000
Cagra.0993s0119
Capsella grandiflora
Cagra.0993s0119
N
0.000
Cagra.1655s0012
Capsella grandiflora
Cagra.1655s0012
N
0.000
Cagra.2117s0038
Capsella grandiflora
Cagra.2117s0038
I
0.000
Carubv10001689m.g
Capsella rubella
Carubv10001689m.g
I
0.000
Carubv10014376m.g
Capsella rubella
Carubv10014376m.g
N
0.000
Carubv10023925m.g
Capsella rubella
Carubv10023925m.g
N
0.000
cassava19218.valid.m1
Manihot esculenta
cassava19218.valid.m1
N
0.000
cassava3990.m1
Manihot esculenta
cassava3990.m1
N
0.000
Ca_00826
Cicer arietinum
Ca_00826
N
0.000
Ca_25633
Cicer arietinum
Ca_25633
I
0.000
Ciclev10012008m.g
Citrus clementina
Ciclev10012008m.g
I
0.000
Cla017937
Citrullus lanatus
Cla017937
I
0.000
Cucsa.241440
Cucumis sativus
Cucsa.241440
I
0.000
Eucgr.A02625
Eucalyptus grandis
Eucgr.A02625
N
0.000
evm.TU.contig_29173.1
Carica papaya
evm.TU.contig_29173.1
I
0.000
F775_02500
Aegilops tauschii
F775_02500
N
0.000
F775_31255
Aegilops tauschii
F775_31255
N
0.000
fgenesh2_kg.6__566__AT5G06250.2
Arabidopsis lyrata
fgenesh2_kg.6__566__AT5G06250.2
N
0.000
gene15627-v1.0-hybrid
Fragaria vesca
gene15627-v1.0-hybrid
I
0.000
GLYMA02G36090
Glycine max
GLYMA02G36090
I
0.000
GLYMA03G35700
Glycine max
GLYMA03G35700
N
0.000
GLYMA10G08871
Glycine max
GLYMA10G08871
I
0.000
GLYMA19G38340
Glycine max
GLYMA19G38340
N
0.000
Gorai.002G237900
Gossypium raimondii
Gorai.002G237900
I
0.000
Gorai.006G152400
Gossypium raimondii
Gorai.006G152400
N
0.000
Gorai.009G399000
Gossypium raimondii
Gorai.009G399000
N
0.000
GRMZM2G142999
Zea mays
GRMZM2G142999
N
0.000
GRMZM2G328742
Zea mays
GRMZM2G328742
N
0.000
GRMZM5G805685
Zea mays
GRMZM5G805685
N
0.000
GSMUA_Achr3G19210_001
Musa acuminata
GSMUA_Achr3G19210_001
N
0.000
GSMUA_Achr6G13140_001
Musa acuminata
GSMUA_Achr6G13140_001
N
0.000
GSMUA_Achr6G35600_001
Musa acuminata
GSMUA_Achr6G35600_001
N
0.000
GSMUA_Achr9G02600_001
Musa acuminata
GSMUA_Achr9G02600_001
I
0.000
LjSGA_011266.1
Lotus japonicus
LjSGA_011266.1
N
0.000
LPERR03G01560
Leersia perrieri
LPERR03G01560
N
0.000
LPERR11G03050
Leersia perrieri
LPERR11G03050
N
0.000
LPERR12G03290
Leersia perrieri
LPERR12G03290
N
0.000
Lus10021326.g
Linum usitatissimum
Lus10021326.g
N
0.000
MDP0000229742
Malus domestica
MDP0000229742
N
0.000
MDP0000288808
Malus domestica
MDP0000288808
N
0.000
mgf018965m
Mimulus guttatus
mgf018965m
N
0.000
mgf019085m
Mimulus guttatus
mgf019085m
N
0.000
MLOC_11014
Hordeum vulgare
MLOC_11014
N
0.000
MLOC_56530
Hordeum vulgare
MLOC_56530
N
0.000
MTR_1g058350
Medicago truncatula
MTR_1g058350
N
0.000
MTR_7g105370
Medicago truncatula
MTR_7g105370
N
0.000
OB03G11610
Oryza brachyantha
OB03G11610
N
0.000
OB10G24100
Oryza brachyantha
OB10G24100
N
0.000
OB11G12920
Oryza brachyantha
OB11G12920
N
0.000
OB12G13420
Oryza brachyantha
OB12G13420
N
0.000
OBART03G01650
Oryza barthii
OBART03G01650
N
0.000
OBART11G03590
Oryza barthii
OBART11G03590
N
0.000
OBART12G03490
Oryza barthii
OBART12G03490
N
0.000
OGLUM03G01630
Oryza glumaepatula
OGLUM03G01630
N
0.000
OGLUM11G03240
Oryza glumaepatula
OGLUM11G03240
N
0.000
OGLUM12G04180
Oryza glumaepatula
OGLUM12G04180
N
0.000
OLONG_005139
Oryza longistaminata
OLONG_005139
N
0.000
OMERI03G01600
Oryza meridionalis
OMERI03G01600
N
0.000
OMERI11G03310
Oryza meridionalis
OMERI11G03310
N
0.000
OMERI12G01740
Oryza meridionalis
OMERI12G01740
N
0.000
ONIVA02G30750
Oryza nivara
ONIVA02G30750
N
0.000
ONIVA07G22860
Oryza nivara
ONIVA07G22860
N
0.000
ONIVA12G03130
Oryza nivara
ONIVA12G03130
N
0.000
OPUNC03G01540
Oryza punctata
OPUNC03G01540
N
0.000
OPUNC11G03320
Oryza punctata
OPUNC11G03320
N
0.000
OPUNC12G03300
Oryza punctata
OPUNC12G03300
N
0.000
orange1.1g019261m.g
Citrus sinensis
orange1.1g019261m.g
I
0.000
ORGLA03G0014300
Oryza glaberrima
ORGLA03G0014300
N
0.000
ORGLA11G0033600
Oryza glaberrima
ORGLA11G0033600
N
0.000
ORGLA12G0033700
Oryza glaberrima
ORGLA12G0033700
N
0.000
ORUFI11G03500
Oryza rufipogon
ORUFI11G03500
N
0.000
OS03G0120900
Oryza sativa
OS03G0120900
N
0.000
OS11G0156000
Oryza sativa
OS11G0156000
N
0.000
Pavir.Ca00165
Panicum virgatum
Pavir.Ca00165
N
0.000
Pavir.Cb02052
Panicum virgatum
Pavir.Cb02052
N
0.000
Pavir.Ha01761
Panicum virgatum
Pavir.Ha01761
N
0.000
Pavir.Hb01814
Panicum virgatum
Pavir.Hb01814
N
0.000
Pavir.J27608
Panicum virgatum
Pavir.J27608
N
0.000
PGSC0003DMG400008936
Solanum tuberosum
PGSC0003DMG400008936
N
0.000
PGSC0003DMG400028159
Solanum tuberosum
PGSC0003DMG400028159
N
0.000
PK04952.1
Cannabis sativa
PK04952.1
I
0.000
POPTR_0002s18260
Populus trichocarpa
POPTR_0002s18260
N
0.000
POPTR_0006s22460
Populus trichocarpa
POPTR_0006s22460
N
0.000
POPTR_0014s10290
Populus trichocarpa
POPTR_0014s10290
I
0.000
POPTR_0016s07540
Populus trichocarpa
POPTR_0016s07540
N
0.000
PRUPE_ppa019539mg
Prunus persica
PRUPE_ppa019539mg
I
0.000
SapurV1A.0003s0340
Salix purpurea
SapurV1A.0003s0340
I
0.000
SapurV1A.0162s0420
Salix purpurea
SapurV1A.0162s0420
I
0.000
SapurV1A.0974s0140
Salix purpurea
SapurV1A.0974s0140
N
0.000
SapurV1A.1211s0020
Salix purpurea
SapurV1A.1211s0020
N
0.000
SapurV1A.1586s0010
Salix purpurea
SapurV1A.1586s0010
N
0.000
Sb05g003450
Sorghum bicolor
Sb05g003450
N
0.000
Sb08g003550
Sorghum bicolor
Sb08g003550
N
0.000
scaffold_301330.1
Arabidopsis lyrata
scaffold_301330.1
N
0.000
scaffold_402221.1
Arabidopsis lyrata
scaffold_402221.1
N
0.000
Si010849m.g
Setaria italica
Si010849m.g
N
0.000
Si027632m.g
Setaria italica
Si027632m.g
N
0.000
Si039972m.g
Setaria italica
Si039972m.g
N
0.000
Solyc09g010230.1
Solanum lycopersicum
Solyc09g010230.1
N
0.000
Solyc10g083210.1
Solanum lycopersicum
Solyc10g083210.1
N
0.000
TCM_022729
Theobroma cacao
TCM_022729
N
0.000
Thhalv10015675m.g
Eutrema salsugineum
Thhalv10015675m.g
I
0.000
Thhalv10017156m.g
Eutrema salsugineum
Thhalv10017156m.g
N
0.000
Thhalv10021305m.g
Eutrema salsugineum
Thhalv10021305m.g
N
0.000
Traes_1BL_53C31B54B
Triticum aestivum
Traes_1BL_53C31B54B
I
0.000
Traes_2AL_25382F498
Triticum aestivum
Traes_2AL_25382F498
N
0.000
Traes_2AL_41E2E66D9
Triticum aestivum
Traes_2AL_41E2E66D9
I
0.000
Traes_2BL_5ECD53274
Triticum aestivum
Traes_2BL_5ECD53274
N
0.000
Traes_2DL_2128A95BD
Triticum aestivum
Traes_2DL_2128A95BD
N
0.000
Traes_2DL_896E50180
Triticum aestivum
Traes_2DL_896E50180
I
0.000
Traes_4AL_4F2E6EF28
Triticum aestivum
Traes_4AL_4F2E6EF28
N
0.000
Traes_4BS_5FECB39FA
Triticum aestivum
Traes_4BS_5FECB39FA
N
0.000
Traes_4DS_E6210A614
Triticum aestivum
Traes_4DS_E6210A614
N
0.000
Traes_5BL_B98E347A8
Triticum aestivum
Traes_5BL_B98E347A8
N
0.000
Traes_5DL_CACDF70D6
Triticum aestivum
Traes_5DL_CACDF70D6
N
0.000
TRIUR3_24950
Triticum urartu
TRIUR3_24950
I
0.000
VIT_08s0007g02810
Vitis vinifera
VIT_08s0007g02810
N
0.000