Phyra42912 (Phytophthora ramorum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Phyra42912 T126264_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Phyra42912
M01181_2.00		 Phytophthora ramorum
RCSCATCHYN
NRDGATGSGY		 PBM
Lambert et al.(2019)
pTH11167		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01181_2.00 C2H2 ZF 7 31
M01181_2.00 C2H2 ZF 37 61
M01181_2.00 C2H2 ZF 67 91

DNA Binding Domains

Protein ID Domain From To Sequence
Phyra42912 C2H2 ZF 7 31
Phyra42912 C2H2 ZF 37 61
Phyra42912 C2H2 ZF 67 91

Links

Other C2H2 ZF family TFs
Other Phytophthora ramorum TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
maker-pir_contig_54-snap-gene-0.26 Pythium irregulare maker-pir_contig_54-snap-gene-0.26 I 0.824
maker-pag1_scaffold_440-fgenesh-gene-0.3 Pythium aphanidermatum maker-pag1_scaffold_440-fgenesh-gene-0.3 I 0.816
gw1.8.393.1 Phytophthora capsici gw1.8.393.1 I 0.807
F443_10717 Phytophthora parasitica F443_10717 I 0.807
fgenesh1_pg.C_scaffold_2000429 Phytophthora capsici fgenesh1_pg.C_scaffold_2000429 I 0.804
HpaG802957 Hyaloperonospora arabidopsidis HpaG802957 I 0.804
PITG_10815 Phytophthora infestans PITG_10815 I 0.804
maker-pve_contig_642-snap-gene-0.15 Pythium vexans maker-pve_contig_642-snap-gene-0.15 I 0.804
fgenesh_scip_prom.46568.8091 Phytophthora kernoviae fgenesh_scip_prom.46568.8091 I 0.788
ALNC14_012910 Albugo laibachii ALNC14_012910 I 0.781