POPTR_0001s16080 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0001s16080 T126782_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s16080.1 C2H2 ZF 14 35
POPTR_0001s16080.1 C2H2 ZF 36 59
POPTR_0001s16080.2 C2H2 ZF 14 35
POPTR_0001s16080.2 C2H2 ZF 36 59

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc02g081620.2 Solanum lycopersicum Solyc02g081620.2 N 0.827
TCM_005999 Theobroma cacao TCM_005999 N 0.827
POPTR_0003s07180 Populus trichocarpa POPTR_0003s07180 N 0.827
Ciclev10015448m.g Citrus clementina Ciclev10015448m.g N 0.827
PGSC0003DMG401017733 Solanum tuberosum PGSC0003DMG401017733 N 0.827
AMTR_s00011p00256770 Amborella trichopoda AMTR_s00011p00256770 N 0.827
Aquca_030_00311 Aquilegia coerulea Aquca_030_00311 N 0.827
mgf011479m Mimulus guttatus mgf011479m N 0.827
mgf015174m Mimulus guttatus mgf015174m N 0.827
cassava20557.m1 Manihot esculenta cassava20557.m1 N 0.827
29994.m000464 Ricinus communis 29994.m000464 N 0.827
Pm010813 Prunus mume Pm010813 N 0.827
mgf015709m Mimulus guttatus mgf015709m N 0.827
evm.TU.supercontig_30.114 Carica papaya evm.TU.supercontig_30.114 N 0.827
GLYMA08G05390 Glycine max GLYMA08G05390 N 0.827
gene19969-v1.0-hybrid Fragaria vesca gene19969-v1.0-hybrid N 0.827
GLYMA05G34280 Glycine max GLYMA05G34280 N 0.827
SapurV1A.0273s0180 Salix purpurea SapurV1A.0273s0180 N 0.827
SapurV1A.3784s0010 Salix purpurea SapurV1A.3784s0010 N 0.827
GSMUA_Achr11G13680_001 Musa acuminata GSMUA_Achr11G13680_001 N 0.827
GSMUA_Achr10G20960_001 Musa acuminata GSMUA_Achr10G20960_001 N 0.827
Gorai.008G050900 Gossypium raimondii Gorai.008G050900 N 0.827
GSMUA_Achr11G18180_001 Musa acuminata GSMUA_Achr11G18180_001 N 0.827
orange1.1g015397m.g Citrus sinensis orange1.1g015397m.g N 0.827
SapurV1A.0104s0210 Salix purpurea SapurV1A.0104s0210 N 0.807
chr4.CM0042.1850.nd Lotus japonicus chr4.CM0042.1850.nd N 0.807
Cucsa.048660 Cucumis sativus Cucsa.048660 N 0.807
Lus10036234.g Linum usitatissimum Lus10036234.g N 0.807
SUF4 Vitis vinifera VIT_01s0011g01240 N 0.807
Lus10038373.g Linum usitatissimum Lus10038373.g N 0.807
Cla010033 Citrullus lanatus Cla010033 N 0.807
Traes_5BL_6688D6ECE Triticum aestivum Traes_5BL_6688D6ECE N 0.803
LPERR09G15520 Leersia perrieri LPERR09G15520 N 0.803
MLOC_57580 Hordeum vulgare MLOC_57580 N 0.803
F775_19799 Aegilops tauschii F775_19799 N 0.803
BRADI4G38000 Brachypodium distachyon BRADI4G38000 N 0.803
BGIOSGA029268 Oryza indica BGIOSGA029268 N 0.803
OB09G26240 Oryza brachyantha OB09G26240 N 0.803
OBART09G19610 Oryza barthii OBART09G19610 N 0.803
OS09G0560900 Oryza sativa OS09G0560900 N 0.803
ORUFI10G16430 Oryza rufipogon ORUFI10G16430 N 0.803
ORGLA09G0158300 Oryza glaberrima ORGLA09G0158300 N 0.803
ONIVA09G20740 Oryza nivara ONIVA09G20740 N 0.803
TRIUR3_07451 Triticum urartu TRIUR3_07451 N 0.803