POPTR_0007s08920 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0007s08920 T126814_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT4G35610
M00859_2.00
Arabidopsis thaliana
NNBHAGCTDNN

NNHAGCTDVNN
PBM
Franco-Zorrilla et al.(2014)
At4g35610
0.757 0.773
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s08920.1 C2H2 ZF 142 163

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0085s0140 Salix purpurea SapurV1A.0085s0140 I 0.815
POPTR_0005s10330 Populus trichocarpa POPTR_0005s10330 I 0.815
Ca_10735 Cicer arietinum Ca_10735 N 0.794
MTR_5g023910 Medicago truncatula MTR_5g023910 N 0.794
GRMZM2G459540 Zea mays GRMZM2G459540 N 0.758
Sb07g028870 Sorghum bicolor Sb07g028870 N 0.758
Carubv10007498m.g Capsella rubella Carubv10007498m.g I 0.757
Thhalv10026068m.g Eutrema salsugineum Thhalv10026068m.g I 0.757
scaffold_700556.1 Arabidopsis lyrata scaffold_700556.1 I 0.757
AT4G35610 Arabidopsis thaliana AT4G35610 D 0.757
Cagra.2350s0104 Capsella grandiflora Cagra.2350s0104 I 0.757