POPTR_0016s05310 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0016s05310 T126845_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s05310.1 C2H2 ZF 281 302
POPTR_0016s05310.1 C2H2 ZF 301 327

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.827
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.827
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.827
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.827
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.827
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.827
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.827
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.827
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.827
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.827
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.827
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.827
TCM_024788 Theobroma cacao TCM_024788 N 0.827
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.827
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.827
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.827
NTT Vitis vinifera VIT_08s0007g08070 N 0.827
Ca_07269 Cicer arietinum Ca_07269 N 0.827
27810.m000651 Ricinus communis 27810.m000651 N 0.827
Pm025853 Prunus mume Pm025853 N 0.827
Cla008187 Citrullus lanatus Cla008187 N 0.827
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.827
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.827
PK03705.1 Cannabis sativa PK03705.1 N 0.827
Bo6g073120 Brassica oleracea Bo6g073120 N 0.827
Bo8g092070 Brassica oleracea Bo8g092070 N 0.827
MDP0000601705 Malus domestica MDP0000601705 N 0.827
Bo4g111000 Brassica oleracea Bo4g111000 N 0.827
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.827
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.827
WIP2 Arabidopsis thaliana AT3G57670 N 0.827
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.827
Bra003295 Brassica rapa Bra003295 N 0.827
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.827
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.827
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.827
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.827
Bra014612 Brassica rapa Bra014612 N 0.827
Bra007346 Brassica rapa Bra007346 N 0.825
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.821
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.821
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.821
MDP0000580545 Malus domestica MDP0000580545 N 0.821
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.821
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.821
MDP0000403797 Malus domestica MDP0000403797 N 0.821
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.821
Pm000471 Prunus mume Pm000471 N 0.821
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.821
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.821
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.818
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.818
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.811
TCM_040610 Theobroma cacao TCM_040610 N 0.811
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.811
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.811
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.811
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.811
Ca_21713 Cicer arietinum Ca_21713 N 0.811
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.811
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.811
30169.m006417 Ricinus communis 30169.m006417 N 0.811
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.811
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.811
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.811
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.811
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.811
OBART06G20890 Oryza barthii OBART06G20890 N 0.811
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.811
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.806
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.803
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.803
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.802
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.802
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.797
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.797
mgf019910m Mimulus guttatus mgf019910m N 0.797
Cla008675 Citrullus lanatus Cla008675 N 0.797
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.797
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.797
VIT_06s0004g01870 Vitis vinifera VIT_06s0004g01870 N 0.797
TCM_005892 Theobroma cacao TCM_005892 N 0.797
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N 0.794
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.793
TCM_011858 Theobroma cacao TCM_011858 N 0.793
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.793
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N 0.793
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.793
MTR_1g093095 Medicago truncatula MTR_1g093095 N 0.793
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.793
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N 0.793
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.793
Ca_08435 Cicer arietinum Ca_08435 N 0.793
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.793
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.793
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.793
cassava46219.m1 Manihot esculenta cassava46219.m1 N 0.793
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.793
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.793
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.793
Pm029018 Prunus mume Pm029018 N 0.793
Ca_24699 Cicer arietinum Ca_24699 N 0.793
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N 0.793
Cla002714 Citrullus lanatus Cla002714 N 0.793
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.793
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.793
MDP0000303483 Malus domestica MDP0000303483 N 0.793
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.791
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.791
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.791
30061.m000294 Ricinus communis 30061.m000294 N 0.791
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.791
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.791
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.788
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.788
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.788
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.788
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.788
OB06G28740 Oryza brachyantha OB06G28740 N 0.787
Bra019822 Brassica rapa Bra019822 N 0.787
WIP6 Arabidopsis thaliana AT1G13290 N 0.787
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.787
ORUFI06G22350 Oryza rufipogon ORUFI06G22350 N 0.787
GRMZM2G436344 Zea mays GRMZM2G436344 N 0.787
GRMZM2G435357 Zea mays GRMZM2G435357 N 0.787
OPUNC06G19020 Oryza punctata OPUNC06G19020 N 0.787
LPERR06G17470 Leersia perrieri LPERR06G17470 N 0.787
Carubv10012013m.g Capsella rubella Carubv10012013m.g N 0.787
OGLUM06G22000 Oryza glumaepatula OGLUM06G22000 N 0.787
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.787
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.787
Pavir.Db00765 Panicum virgatum Pavir.Db00765 N 0.787
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.787
BGIOSGA023262 Oryza indica BGIOSGA023262 N 0.787
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.787
ONIVA06G24670 Oryza nivara ONIVA06G24670 N 0.787
Bo5g015200 Brassica oleracea Bo5g015200 N 0.787
ORGLA06G0173600 Oryza glaberrima ORGLA06G0173600 N 0.787
Si006616m.g Setaria italica Si006616m.g N 0.787
OS06G0612300 Oryza sativa OS06G0612300 N 0.787
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N 0.787
BRADI1G36067 Brachypodium distachyon BRADI1G36067 N 0.787
Sb10g024040 Sorghum bicolor Sb10g024040 N 0.787
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N 0.787
MDP0000144266 Malus domestica MDP0000144266 N 0.786
MDP0000142494 Malus domestica MDP0000142494 N 0.785
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N 0.784
MDP0000899280 Malus domestica MDP0000899280 N 0.784
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.784
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N 0.784
29908.m006047 Ricinus communis 29908.m006047 N 0.784
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N 0.784
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N 0.780
TCM_034881 Theobroma cacao TCM_034881 N 0.778
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.778
TT1 Vitis vinifera VIT_18s0001g05860 N 0.778
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N 0.778
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.778
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.778
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.778
MDP0000573922 Malus domestica MDP0000573922 N 0.775
OMERI09G02890 Oryza meridionalis OMERI09G02890 N 0.774
OGLUM09G04400 Oryza glumaepatula OGLUM09G04400 N 0.774
OPUNC09G03280 Oryza punctata OPUNC09G03280 N 0.774
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.774
ORUFI09G04060 Oryza rufipogon ORUFI09G04060 N 0.774
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.774
ORGLA09G0176200 Oryza glaberrima ORGLA09G0176200 N 0.774
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.774
BGIOSGA030081 Oryza indica BGIOSGA030081 N 0.774
OBART09G03640 Oryza barthii OBART09G03640 N 0.774
ONIVA02G14580 Oryza nivara ONIVA02G14580 N 0.774
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.772
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.772
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.772
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N 0.772
BGIOSGA030484 Oryza indica BGIOSGA030484 N 0.772
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.772
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.772
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.772
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.772
MDP0000131949 Malus domestica MDP0000131949 N 0.772
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.772
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.772
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N 0.772
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.772
MDP0000300013 Malus domestica MDP0000300013 N 0.772
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.772
GRMZM2G150011 Zea mays GRMZM2G150011 N 0.772
Si030360m.g Setaria italica Si030360m.g N 0.772
Sb02g020840 Sorghum bicolor Sb02g020840 N 0.772
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.772
TCM_041441 Theobroma cacao TCM_041441 N 0.772
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N 0.772
TRIUR3_30537 Triticum urartu TRIUR3_30537 N 0.772
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N 0.772
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.772
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.772
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N 0.772
MLOC_54308 Hordeum vulgare MLOC_54308 N 0.772
LPERR09G03450 Leersia perrieri LPERR09G03450 N 0.772
OMERI09G03940 Oryza meridionalis OMERI09G03940 N 0.772
ONIVA08G08420 Oryza nivara ONIVA08G08420 N 0.772
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N 0.772
OPUNC09G04260 Oryza punctata OPUNC09G04260 N 0.772
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.772
OS09G0307400 Oryza sativa OS09G0307400 N 0.772
30055.m001542 Ricinus communis 30055.m001542 N 0.772
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.772
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.772
Pm001374 Prunus mume Pm001374 N 0.772
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.772
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.768
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.767
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.767
Ca_16482 Cicer arietinum Ca_16482 N 0.767
Cla015481 Citrullus lanatus Cla015481 N 0.767
mgf022319m Mimulus guttatus mgf022319m N 0.767
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.766
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.764
SapurV1A.1001s0040 Salix purpurea SapurV1A.1001s0040 N 0.764
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.763
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.763
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.763
ORGLA02G0068500 Oryza glaberrima ORGLA02G0068500 N 0.761
Bo5g081360 Brassica oleracea Bo5g081360 N 0.761
OBART02G07320 Oryza barthii OBART02G07320 N 0.761
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.760
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.760
Ca_27078 Cicer arietinum Ca_27078 N 0.760
Cla000184 Citrullus lanatus Cla000184 N 0.759
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.759
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.758
GSMUA_Achr5G26210_001 Musa acuminata GSMUA_Achr5G26210_001 N 0.758
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.758
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.758
OBART08G19670 Oryza barthii OBART08G19670 N 0.758
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.758
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.758
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.758
OB08G26650 Oryza brachyantha OB08G26650 N 0.758
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.758
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.758
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.758
OS09G0485600 Oryza sativa OS09G0485600 N 0.758
Si013819m.g Setaria italica Si013819m.g N 0.758
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N 0.758
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.758
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.758
OS08G0504000 Oryza sativa OS08G0504000 N 0.758
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.758
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.758
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.758
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.758
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.758
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.758
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.758
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.758
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.758