POPTR_0016s10480 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0016s10480 T126847_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBE
M01858_2.00 		Arabidopsis thaliana
NNNASWN
NWSTNNN		 PBM
Weirauch et al.(2014)
pTH7538 		0.757 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s10480.1 C2H2 ZF 30 52

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava4410.m1 Manihot esculenta cassava4410.m1 N 0.825
28345.m000111 Ricinus communis 28345.m000111 N 0.825
TCM_021876 Theobroma cacao TCM_021876 N 0.825
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N 0.825
Pm002649 Prunus mume Pm002649 N 0.817
TRIUR3_03721 Triticum urartu TRIUR3_03721 I 0.805
OMERI07G13080 Oryza meridionalis OMERI07G13080 I 0.805
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I 0.805
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I 0.805
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I 0.805
Pm009420 Prunus mume Pm009420 I 0.805
OLONG_005038 Oryza longistaminata OLONG_005038 I 0.805
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I 0.805
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I 0.805
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I 0.805
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I 0.805
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I 0.805
OS11G0707300 Oryza sativa OS11G0707300 I 0.805
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I 0.805
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I 0.805
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I 0.805
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I 0.805
29603.m000536 Ricinus communis 29603.m000536 I 0.805
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I 0.805
ONIVA11G23290 Oryza nivara ONIVA11G23290 I 0.805
cassava40050.m1 Manihot esculenta cassava40050.m1 I 0.805
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I 0.805
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I 0.805
MDP0000225209 Malus domestica MDP0000225209 I 0.805
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I 0.805
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I 0.805
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I 0.805
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I 0.805
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I 0.805
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I 0.805
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I 0.805
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I 0.805
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I 0.805
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I 0.805
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I 0.805
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I 0.805
OBART11G23770 Oryza barthii OBART11G23770 I 0.805
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I 0.805
Carubv10016073m.g Capsella rubella Carubv10016073m.g I 0.805
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I 0.805
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I 0.805
Carubv10024766m.g Capsella rubella Carubv10024766m.g I 0.805
cassava3359.m1 Manihot esculenta cassava3359.m1 I 0.805
Si024070m.g Setaria italica Si024070m.g I 0.805
Bo3g003640 Brassica oleracea Bo3g003640 I 0.805
BGIOSGA033510 Oryza indica BGIOSGA033510 I 0.805
Bra023759 Brassica rapa Bra023759 I 0.805
Bra005874 Brassica rapa Bra005874 I 0.805
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I 0.805
Bo1g102390 Brassica oleracea Bo1g102390 I 0.805
SUP Arabidopsis thaliana AT3G23130 I 0.805
ZFP11 Arabidopsis thaliana AT2G42410 I 0.805
GLYMA13G34450 Glycine max GLYMA13G34450 I 0.803
GLYMA12G35930 Glycine max GLYMA12G35930 I 0.803
Ca_12901 Cicer arietinum Ca_12901 I 0.803
Carubv10006881m.g Capsella rubella Carubv10006881m.g I 0.794
Bo1g017920 Brassica oleracea Bo1g017920 I 0.794
Cucsa.255130 Cucumis sativus Cucsa.255130 I 0.794
GRMZM2G000126 Zea mays GRMZM2G000126 I 0.794
Cla021878 Citrullus lanatus Cla021878 I 0.794
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I 0.794
Bostr.30275s0246 Boechera stricta Bostr.30275s0246 I 0.794
Bra013257 Brassica rapa Bra013257 I 0.794
Cagra.3356s0074 Capsella grandiflora Cagra.3356s0074 I 0.794
Lus10022206.g Linum usitatissimum Lus10022206.g I 0.794
AT4G17810 Arabidopsis thaliana AT4G17810 I 0.794
Si011797m.g Setaria italica Si011797m.g I 0.792
OGLUM04G02100 Oryza glumaepatula OGLUM04G02100 I 0.782
BGIOSGA015610 Oryza indica BGIOSGA015610 I 0.782
F775_21953 Aegilops tauschii F775_21953 I 0.782
OB04G12040 Oryza brachyantha OB04G12040 I 0.782
Sb06g001730 Sorghum bicolor Sb06g001730 I 0.782
OBART04G02370 Oryza barthii OBART04G02370 I 0.782
Pavir.J31403 Panicum virgatum Pavir.J31403 I 0.782
GRMZM2G137736 Zea mays GRMZM2G137736 I 0.782
Cla016442 Citrullus lanatus Cla016442 I 0.782
LPERR04G01660 Leersia perrieri LPERR04G01660 I 0.782
OMERI04G02610 Oryza meridionalis OMERI04G02610 I 0.782
Cucsa.313240 Cucumis sativus Cucsa.313240 I 0.782
OLONG_022667 Oryza longistaminata OLONG_022667 I 0.782
ORUFI04G03150 Oryza rufipogon ORUFI04G03150 I 0.782
Pavir.Gb02516 Panicum virgatum Pavir.Gb02516 I 0.782
OS04G0168100 Oryza sativa OS04G0168100 I 0.782
ONIVA04G01910 Oryza nivara ONIVA04G01910 I 0.782
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I 0.779
Lus10022204.g Linum usitatissimum Lus10022204.g I 0.779
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I 0.779
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I 0.779
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I 0.779
Lus10021213.g Linum usitatissimum Lus10021213.g I 0.779
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I 0.779
mgf024356m Mimulus guttatus mgf024356m I 0.779
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I 0.779
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I 0.779
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I 0.779
TRIUR3_25222 Triticum urartu TRIUR3_25222 I 0.779
GLYMA07G16290 Glycine max GLYMA07G16290 I 0.779
Sb02g009930 Sorghum bicolor Sb02g009930 I 0.779
GRMZM2G409452 Zea mays GRMZM2G409452 I 0.779
GRMZM2G443109 Zea mays GRMZM2G443109 I 0.779
Si032478m.g Setaria italica Si032478m.g I 0.779
Aquca_003_00162 Aquilegia coerulea Aquca_003_00162 N 0.777
OBART07G11660 Oryza barthii OBART07G11660 N 0.769
MTR_7g063220 Medicago truncatula MTR_7g063220 I 0.769
MDP0000143134 Malus domestica MDP0000143134 N 0.769
OS07G0417400 Oryza sativa OS07G0417400 N 0.769
Bra033683 Brassica rapa Bra033683 N 0.769
Ciclev10006751m.g Citrus clementina Ciclev10006751m.g N 0.769
Carubv10028256m.g Capsella rubella Carubv10028256m.g N 0.769
Cucsa.117650 Cucumis sativus Cucsa.117650 N 0.769
LPERR07G09750 Leersia perrieri LPERR07G09750 N 0.769
Gorai.011G172000 Gossypium raimondii Gorai.011G172000 N 0.769
ONIVA07G09630 Oryza nivara ONIVA07G09630 N 0.769
ORGLA07G0099100 Oryza glaberrima ORGLA07G0099100 N 0.769
TCM_020819 Theobroma cacao TCM_020819 N 0.769
MTR_1g075430 Medicago truncatula MTR_1g075430 N 0.769
OLONG_012182 Oryza longistaminata OLONG_012182 N 0.769
MTR_4g064873 Medicago truncatula MTR_4g064873 N 0.769
OGLUM07G11160 Oryza glumaepatula OGLUM07G11160 N 0.769
Bo9g059250 Brassica oleracea Bo9g059250 N 0.769
ORUFI07G11810 Oryza rufipogon ORUFI07G11810 N 0.769
Bostr.3148s0115 Boechera stricta Bostr.3148s0115 N 0.769
Cagra.19122s0001 Capsella grandiflora Cagra.19122s0001 N 0.769
Bra027500 Brassica rapa Bra027500 N 0.769
GSMUA_Achr8G14360_001 Musa acuminata GSMUA_Achr8G14360_001 N 0.769
evm.TU.supercontig_44.98 Carica papaya evm.TU.supercontig_44.98 N 0.769
GLYMA12G06340 Glycine max GLYMA12G06340 N 0.769
GLYMA10G32810 Glycine max GLYMA10G32810 N 0.769
Eucgr.H00184 Eucalyptus grandis Eucgr.H00184 N 0.769
scaffold_800693.1 Arabidopsis lyrata scaffold_800693.1 N 0.769
chr1.CM0147.870.nc Lotus japonicus chr1.CM0147.870.nc I 0.769
GLYMA20G34840 Glycine max GLYMA20G34840 N 0.769
ONIVA07G09640 Oryza nivara ONIVA07G09640 N 0.769
Bo7g065530 Brassica oleracea Bo7g065530 N 0.769
PRUPE_ppb012667mg Prunus persica PRUPE_ppb012667mg N 0.769
cassava32634.m1 Manihot esculenta cassava32634.m1 N 0.769
BGIOSGA025569 Oryza indica BGIOSGA025569 N 0.769
OB07G18110 Oryza brachyantha OB07G18110 N 0.769
OPUNC07G10480 Oryza punctata OPUNC07G10480 N 0.769
orange1.1g037433m.g Citrus sinensis orange1.1g037433m.g N 0.769
Pm009419 Prunus mume Pm009419 N 0.769
PRUPE_ppa016491mg Prunus persica PRUPE_ppa016491mg N 0.769
Cla008348 Citrullus lanatus Cla008348 N 0.769
PRUPE_ppa021945mg Prunus persica PRUPE_ppa021945mg N 0.769
Cla021877 Citrullus lanatus Cla021877 N 0.769
gene30215-v1.0-hybrid Fragaria vesca gene30215-v1.0-hybrid N 0.769
Ciclev10022375m.g Citrus clementina Ciclev10022375m.g N 0.766
Cucsa.016990 Cucumis sativus Cucsa.016990 N 0.766
PK22236.1 Cannabis sativa PK22236.1 N 0.766
AMTR_s00012p00258620 Amborella trichopoda AMTR_s00012p00258620 N 0.766
AMTR_s00009p00194700 Amborella trichopoda AMTR_s00009p00194700 N 0.766
PDK_20s1360411g002 Phoenix dactylifera PDK_20s1360411g002 N 0.766
VIT_06s0004g05260 Vitis vinifera VIT_06s0004g05260 N 0.766
Cla006093 Citrullus lanatus Cla006093 N 0.766
orange1.1g044013m.g Citrus sinensis orange1.1g044013m.g N 0.766
MTR_1g070250 Medicago truncatula MTR_1g070250 N 0.766
F775_00917 Aegilops tauschii F775_00917 I 0.760
BGIOSGA018378 Oryza indica BGIOSGA018378 I 0.757
OBART05G10090 Oryza barthii OBART05G10090 I 0.757
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I 0.757
OB05G18710 Oryza brachyantha OB05G18710 I 0.757
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I 0.757
RBE Arabidopsis thaliana AT5G06070 D 0.757
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I 0.757
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I 0.757
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I 0.757
Bra009160 Brassica rapa Bra009160 I 0.757
cassava14614.m1 Manihot esculenta cassava14614.m1 I 0.757
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I 0.757
LPERR05G08090 Leersia perrieri LPERR05G08090 I 0.757
e_gw1.1.457.1 Physcomitrella patens e_gw1.1.457.1 I 0.757
e_gw1.6.268.1 Physcomitrella patens e_gw1.6.268.1 I 0.757
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I 0.757
TRIUR3_04794 Triticum urartu TRIUR3_04794 I 0.757
TCM_021875 Theobroma cacao TCM_021875 I 0.757
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I 0.757
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I 0.757
Si019050m.g Setaria italica Si019050m.g I 0.757
OS05G0286100 Oryza sativa OS05G0286100 I 0.757
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I 0.757
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I 0.757
OPUNC05G08760 Oryza punctata OPUNC05G08760 I 0.757
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I 0.757
ONIVA06G26970 Oryza nivara ONIVA06G26970 I 0.757
MTR_1g070265 Medicago truncatula MTR_1g070265 I 0.757
Bo9g176590 Brassica oleracea Bo9g176590 I 0.757
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I 0.757
MLOC_76482 Hordeum vulgare MLOC_76482 I 0.757
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I 0.757
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I 0.757
Carubv10002935m.g Capsella rubella Carubv10002935m.g I 0.757
OLONG_023754 Oryza longistaminata OLONG_023754 I 0.757