POPTR_0327s00220 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0327s00220 T126853_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.769 0.854
id1
M02672_2.00
Zea mays
TBKYYBYTHBYG

CRVDARVRRMVA
SELEX
Mathelier et al.(2014)
MA0120.1
0.762 0.756
id1
M10380_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ID1_01
0.762 0.756
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0327s00220.1 C2H2 ZF 112 133
POPTR_0327s00220.1 C2H2 ZF 134 158

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
id1 Zea mays GRMZM2G011357 D 0.762
JKD Arabidopsis thaliana AT5G03150 D 0.769
Bostr.2983s0191 Boechera stricta Bostr.2983s0191 I 0.802
Bostr.2128s0141 Boechera stricta Bostr.2128s0141 I 0.769
Aquca_049_00144 Aquilegia coerulea Aquca_049_00144 I 0.769
Aquca_027_00051 Aquilegia coerulea Aquca_027_00051 I 0.769
evm.TU.supercontig_45.59 Carica papaya evm.TU.supercontig_45.59 I 0.769
cassava6007.valid.m1 Manihot esculenta cassava6007.valid.m1 I 0.778
Aquca_007_00164 Aquilegia coerulea Aquca_007_00164 I 0.759
mgf017113m Mimulus guttatus mgf017113m I 0.773
mgf003691m Mimulus guttatus mgf003691m I 0.769
Cagra.0635s0013 Capsella grandiflora Cagra.0635s0013 I 0.802
Cagra.1597s0004 Capsella grandiflora Cagra.1597s0004 I 0.769
Carubv10000736m.g Capsella rubella Carubv10000736m.g I 0.769
Eucgr.J00939 Eucalyptus grandis Eucgr.J00939 I 0.778
Eucgr.B03566 Eucalyptus grandis Eucgr.B03566 I 0.821
Eucgr.B01471 Eucalyptus grandis Eucgr.B01471 I 0.788
Eucgr.A01159 Eucalyptus grandis Eucgr.A01159 I 0.769
Ciclev10028294m.g Citrus clementina Ciclev10028294m.g I 0.778
Ciclev10019959m.g Citrus clementina Ciclev10019959m.g I 0.769
Ciclev10011592m.g Citrus clementina Ciclev10011592m.g I 0.769
Ciclev10007837m.g Citrus clementina Ciclev10007837m.g I 0.772
Carubv10001008m.g Capsella rubella Carubv10001008m.g I 0.802
mgf001929m Mimulus guttatus mgf001929m I 0.784
Cucsa.306990 Cucumis sativus Cucsa.306990 I 0.774
29883.m001956 Ricinus communis 29883.m001956 I 0.769
29643.m000323 Ricinus communis 29643.m000323 I 0.778
Pm030100 Prunus mume Pm030100 I 0.774
Pm020252 Prunus mume Pm020252 I 0.774
Pm001002 Prunus mume Pm001002 I 0.769
Cla018558 Citrullus lanatus Cla018558 I 0.769
Cla018101 Citrullus lanatus Cla018101 I 0.774
Cla015029 Citrullus lanatus Cla015029 I 0.774
Cla005124 Citrullus lanatus Cla005124 I 0.778
30078.m002347 Ricinus communis 30078.m002347 I 0.769
30128.m008580 Ricinus communis 30128.m008580 I 0.807
Cucsa.222420 Cucumis sativus Cucsa.222420 I 0.778
Cucsa.181990 Cucumis sativus Cucsa.181990 I 0.763
Cucsa.084240 Cucumis sativus Cucsa.084240 I 0.774
cassava832.valid.m1 Manihot esculenta cassava832.valid.m1 I 0.778
cassava26767.m1 Manihot esculenta cassava26767.m1 I 0.769
cassava24590.valid.m1 Manihot esculenta cassava24590.valid.m1 I 0.769
cassava21529.m1 Manihot esculenta cassava21529.m1 I 0.827
cassava20362.m1 Manihot esculenta cassava20362.m1 I 0.769
cassava20187.m1 Manihot esculenta cassava20187.m1 I 0.769
Ca_17124 Cicer arietinum Ca_17124 I 0.769
LjT03L03.50.nd Lotus japonicus LjT03L03.50.nd I 0.769
SapurV1A.0444s0180 Salix purpurea SapurV1A.0444s0180 I 0.788
SapurV1A.0376s0110 Salix purpurea SapurV1A.0376s0110 I 0.788
SapurV1A.0209s0070 Salix purpurea SapurV1A.0209s0070 I 0.769
SapurV1A.0112s0130 Salix purpurea SapurV1A.0112s0130 I 0.769
SapurV1A.0006s1510 Salix purpurea SapurV1A.0006s1510 I 0.769
Pavir.Ab01787 Panicum virgatum Pavir.Ab01787 I 0.801
Pavir.Aa01904 Panicum virgatum Pavir.Aa01904 I 0.801
orange1.1g011807m.g Citrus sinensis orange1.1g011807m.g I 0.769
orange1.1g011334m.g Citrus sinensis orange1.1g011334m.g I 0.769
SapurV1A.1019s0030 Salix purpurea SapurV1A.1019s0030 I 0.763
SapurV1A.2164s0010 Salix purpurea SapurV1A.2164s0010 I 0.763
LjSGA_017927.1 Lotus japonicus LjSGA_017927.1 I 0.773
chr5.CM0299.500.nd Lotus japonicus chr5.CM0299.500.nd I 0.758
chr1.CM0322.120.nc Lotus japonicus chr1.CM0322.120.nc I 0.769
PK25985.1 Cannabis sativa PK25985.1 I 0.802
PK18288.1 Cannabis sativa PK18288.1 I 0.769
PK06347.1 Cannabis sativa PK06347.1 I 0.774
Thhalv10028701m.g Eutrema salsugineum Thhalv10028701m.g I 0.769
Thhalv10013267m.g Eutrema salsugineum Thhalv10013267m.g I 0.769
SapurV1A.5138s0010 Salix purpurea SapurV1A.5138s0010 I 0.769
orange1.1g011146m.g Citrus sinensis orange1.1g011146m.g I 0.778
orange1.1g008017m.g Citrus sinensis orange1.1g008017m.g I 0.772
Gorai.007G139800 Gossypium raimondii Gorai.007G139800 I 0.769
Gorai.006G167600 Gossypium raimondii Gorai.006G167600 I 0.769
Gorai.006G120000 Gossypium raimondii Gorai.006G120000 I 0.778
Gorai.005G198100 Gossypium raimondii Gorai.005G198100 I 0.827
Gorai.004G076800 Gossypium raimondii Gorai.004G076800 I 0.778
Gorai.001G131000 Gossypium raimondii Gorai.001G131000 I 0.778
gene20264-v1.0-hybrid Fragaria vesca gene20264-v1.0-hybrid I 0.774
gene09703-v1.0-hybrid Fragaria vesca gene09703-v1.0-hybrid I 0.769
gene04812-v1.0-hybrid Fragaria vesca gene04812-v1.0-hybrid I 0.778
Gorai.008G002200 Gossypium raimondii Gorai.008G002200 I 0.769
Gorai.009G418600 Gossypium raimondii Gorai.009G418600 I 0.769
MDP0000826293 Malus domestica MDP0000826293 I 0.769
MDP0000688613 Malus domestica MDP0000688613 I 0.769
MDP0000480293 Malus domestica MDP0000480293 I 0.769
MDP0000319344 Malus domestica MDP0000319344 I 0.774
MDP0000243664 Malus domestica MDP0000243664 I 0.769
MDP0000233477 Malus domestica MDP0000233477 I 0.778
MDP0000122321 Malus domestica MDP0000122321 I 0.769
Lus10036116.g Linum usitatissimum Lus10036116.g I 0.784
Lus10007409.g Linum usitatissimum Lus10007409.g I 0.784
evm.TU.supercontig_52.117 Carica papaya evm.TU.supercontig_52.117 I 0.769
ORUFI02G19290 Oryza rufipogon ORUFI02G19290 I 0.801
LPERR02G14730 Leersia perrieri LPERR02G14730 I 0.801
GSMUA_Achr4G07200_001 Musa acuminata GSMUA_Achr4G07200_001 I 0.764
GSMUA_Achr11G07460_001 Musa acuminata GSMUA_Achr11G07460_001 I 0.774
GSMUA_Achr11G05700_001 Musa acuminata GSMUA_Achr11G05700_001 I 0.764
GRMZM2G320287 Zea mays GRMZM2G320287 I 0.801
GLYMA19G42280 Glycine max GLYMA19G42280 I 0.768
GLYMA19G36430 Glycine max GLYMA19G36430 I 0.769
GLYMA19G34220 Glycine max GLYMA19G34220 I 0.768
GLYMA13G20231 Glycine max GLYMA13G20231 I 0.769
MTR_2g090745 Medicago truncatula MTR_2g090745 I 0.759
MTR_2g093960 Medicago truncatula MTR_2g093960 I 0.784
ORGLA02G0157900 Oryza glaberrima ORGLA02G0157900 I 0.801
OPUNC02G16560 Oryza punctata OPUNC02G16560 I 0.801
ONIVA02G20290 Oryza nivara ONIVA02G20290 I 0.801
OMERI02G18510 Oryza meridionalis OMERI02G18510 I 0.801
OLONG_013811 Oryza longistaminata OLONG_013811 I 0.801
OGLUM02G18620 Oryza glumaepatula OGLUM02G18620 I 0.801
OBART02G18320 Oryza barthii OBART02G18320 I 0.801
OB02G26130 Oryza brachyantha OB02G26130 I 0.801
MTR_4g059870 Medicago truncatula MTR_4g059870 I 0.778
GLYMA12G29370 Glycine max GLYMA12G29370 I 0.798
GLYMA12G07510 Glycine max GLYMA12G07510 I 0.784
Bra009549 Brassica rapa Bra009549 I 0.769
Bra005741 Brassica rapa Bra005741 I 0.769
Bo9g183170 Brassica oleracea Bo9g183170 I 0.769
Bo9g021710 Brassica oleracea Bo9g021710 I 0.773
Bo2g167740 Brassica oleracea Bo2g167740 I 0.784
Bo2g100660 Brassica oleracea Bo2g100660 I 0.769
Bo2g003880 Brassica oleracea Bo2g003880 I 0.769
BGIOSGA006371 Oryza indica BGIOSGA006371 I 0.801
AMTR_s00007p00061550 Amborella trichopoda AMTR_s00007p00061550 I 0.769
Bra018535 Brassica rapa Bra018535 I 0.769
Bra038293 Brassica rapa Bra038293 I 0.778
GLYMA11G15950 Glycine max GLYMA11G15950 I 0.807
GLYMA10G05880 Glycine max GLYMA10G05880 I 0.769
GLYMA10G03541 Glycine max GLYMA10G03541 I 0.769
GLYMA03G31390 Glycine max GLYMA03G31390 I 0.769
JKD Arabidopsis lyrata fgenesh2_kg.6__219__AT5G03150.1 I 0.769
AtIDD12 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6003159 I 0.802
F775_04344 Aegilops tauschii F775_04344 I 0.801
BRADI5G08537 Brachypodium distachyon BRADI5G08537 I 0.777
BRADI3G44520 Brachypodium distachyon BRADI3G44520 I 0.801
AMTR_s00002p00270520 Amborella trichopoda AMTR_s00002p00270520 I 0.769
Ca_14587 Cicer arietinum Ca_14587 I 0.778
TCM_022127 Theobroma cacao TCM_022127 I 0.769
TCM_008261 Theobroma cacao TCM_008261 I 0.827
TCM_004271 Theobroma cacao TCM_004271 I 0.769
Solyc11g069240.1 Solanum lycopersicum Solyc11g069240.1 I 0.778
Solyc10g084180.1 Solanum lycopersicum Solyc10g084180.1 I 0.769
Solyc09g065670.2 Solanum lycopersicum Solyc09g065670.2 I 0.794
Solyc09g007550.2 Solanum lycopersicum Solyc09g007550.2 I 0.769
Solyc07g053570.2 Solanum lycopersicum Solyc07g053570.2 I 0.764
Solyc06g075250.2 Solanum lycopersicum Solyc06g075250.2 I 0.802
TCM_041053 Theobroma cacao TCM_041053 I 0.778
Traes_4AS_F7A905B43 Triticum aestivum Traes_4AS_F7A905B43 I 0.801
Ca_07799 Cicer arietinum Ca_07799 I 0.774
Ca_02459 Cicer arietinum Ca_02459 I 0.759
VIT_09s0054g01820 Vitis vinifera VIT_09s0054g01820 I 0.827
JKD Vitis vinifera VIT_08s0040g02100 I 0.769
VIT_06s0004g03070 Vitis vinifera VIT_06s0004g03070 I 0.778
VIT_00s0179g00170 Vitis vinifera VIT_00s0179g00170 I 0.769
TRIUR3_32694 Triticum urartu TRIUR3_32694 I 0.801
Traes_4DL_DF1F43E16 Triticum aestivum Traes_4DL_DF1F43E16 I 0.801
Traes_4BL_38E55D7B4 Triticum aestivum Traes_4BL_38E55D7B4 I 0.796
Solyc02g062940.2 Solanum lycopersicum Solyc02g062940.2 I 0.778
Solyc01g099340.2 Solanum lycopersicum Solyc01g099340.2 I 0.759
POPTR_0001s12770 Populus trichocarpa POPTR_0001s12770 I 0.827
PGSC0003DMG400024700 Solanum tuberosum PGSC0003DMG400024700 I 0.759
PGSC0003DMG400019342 Solanum tuberosum PGSC0003DMG400019342 I 0.794
PGSC0003DMG400015498 Solanum tuberosum PGSC0003DMG400015498 I 0.778
PGSC0003DMG400010478 Solanum tuberosum PGSC0003DMG400010478 I 0.769
PGSC0003DMG400009382 Solanum tuberosum PGSC0003DMG400009382 I 0.759
PGSC0003DMG400008110 Solanum tuberosum PGSC0003DMG400008110 I 0.778
PGSC0003DMG400003372 Solanum tuberosum PGSC0003DMG400003372 I 0.802
PGSC0003DMG400001747 Solanum tuberosum PGSC0003DMG400001747 I 0.769
POPTR_0002s04880 Populus trichocarpa POPTR_0002s04880 I 0.769
POPTR_0005s23660 Populus trichocarpa POPTR_0005s23660 I 0.788
Si036003m.g Setaria italica Si036003m.g I 0.762
Si019690m.g Setaria italica Si019690m.g I 0.801
Sb04g021440 Sorghum bicolor Sb04g021440 I 0.801
Sb01g021480 Sorghum bicolor Sb01g021480 I 0.762
PRUPE_ppa005468mg Prunus persica PRUPE_ppa005468mg I 0.774
PRUPE_ppa004548mg Prunus persica PRUPE_ppa004548mg I 0.769
PRUPE_ppa003849mg Prunus persica PRUPE_ppa003849mg I 0.774
POPTR_0016s08990 Populus trichocarpa POPTR_0016s08990 I 0.769
POPTR_0006s13130 Populus trichocarpa POPTR_0006s13130 I 0.769
OS02G0518500 Oryza sativa OS02G0518500 I 0.801