POPTR_0327s00220 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0327s00220 T126853_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.769 0.854
id1
M02672_2.00
Zea mays
TBKYYBYTHBYG

CRVDARVRRMVA
SELEX
Mathelier et al.(2014)
MA0120.1
0.762 0.756
id1
M10380_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ID1_01
0.762 0.756
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0327s00220.1 C2H2 ZF 112 133
POPTR_0327s00220.1 C2H2 ZF 134 158

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pm022530 Prunus mume Pm022530 N 0.000
PRUPE_ppa006028mg Prunus persica PRUPE_ppa006028mg N 0.000