scaffold_501791.1 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 scaffold_501791.1 T128313_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
REF6
M08081_2.00 		Arabidopsis thaliana
DNCTCTGTTTY
RAAACAGAGNH		 ChIP-seq
Mathelier et al.(2014)
MA1415.1 		0.812 0.956
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_501791.1 C2H2 ZF 1261 1284
scaffold_501791.1 C2H2 ZF 1285 1308
scaffold_501791.1 C2H2 ZF 1314 1338
scaffold_501791.1 C2H2 ZF 1344 1370

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
REF6 Arabidopsis lyrata fgenesh2_kg.5__1196__AT3G48430.1 I 0.827
Bra018060 Brassica rapa Bra018060 I 0.817
Carubv10016578m.g Capsella rubella Carubv10016578m.g I 0.816
Cagra.0807s0010 Capsella grandiflora Cagra.0807s0010 I 0.816
Thhalv10010066m.g Eutrema salsugineum Thhalv10010066m.g I 0.814
REF6 Arabidopsis thaliana AT3G48430 D 0.812
Thhalv10010068m.g Eutrema salsugineum Thhalv10010068m.g I 0.805
Bo8g076910 Brassica oleracea Bo8g076910 I 0.805