scaffold_602360.1 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 scaffold_602360.1 T128317_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G22990
M06821_2.00 		Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW		 Dap-seq
OMalley et al.(2016)
AT5G22990_col_a 		0.825 0.957
AT2G15740
M06810_2.00 		Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW		 Dap-seq
OMalley et al.(2016)
AT2G15740_col_a 		0.825 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_602360.1 C2H2 ZF 242 265

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G15740 Arabidopsis thaliana AT2G15740 D 0.825
Thhalv10015522m.g Eutrema salsugineum Thhalv10015522m.g I 0.825
Cagra.3954s0034 Capsella grandiflora Cagra.3954s0034 I 0.825
Cagra.6034s0007 Capsella grandiflora Cagra.6034s0007 I 0.825
Carubv10015875m.g Capsella rubella Carubv10015875m.g I 0.825
Carubv10002800m.g Capsella rubella Carubv10002800m.g I 0.825
Carubv10016477m.g Capsella rubella Carubv10016477m.g I 0.825
Bostr.10199s0147 Boechera stricta Bostr.10199s0147 I 0.825
Thhalv10023174m.g Eutrema salsugineum Thhalv10023174m.g I 0.825
AT5G22990 Arabidopsis thaliana AT5G22990 D 0.825
AT2G18490 Arabidopsis thaliana AT2G18490 I 0.825
scaffold_303767.1 Arabidopsis lyrata scaffold_303767.1 I 0.825
Bo7g010020 Brassica oleracea Bo7g010020 I 0.825
Bra039606 Brassica rapa Bra039606 I 0.825
Bo9g147060 Brassica oleracea Bo9g147060 I 0.825
Carubv10027554m.g Capsella rubella Carubv10027554m.g I 0.805
Carubv10025077m.g Capsella rubella Carubv10025077m.g I 0.805
Cagra.0604s0001 Capsella grandiflora Cagra.0604s0001 I 0.805
Bostr.18351s0050 Boechera stricta Bostr.18351s0050 I 0.805
Cagra.2968s0004 Capsella grandiflora Cagra.2968s0004 I 0.805
AT5G42640 Arabidopsis thaliana AT5G42640 I 0.793
Carubv10015674m.g Capsella rubella Carubv10015674m.g I 0.766