CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMAR001730
(
Strigamia maritima
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
SMAR001730
T129032_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
esg
M06050_2.00
Drosophila melanogaster
CACCTGH
DCAGGTG
B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981
0.779
0.885
wor
M03664_2.00
Drosophila melanogaster
GYRACAGGTGYAH
DTRCACCTGTYRC
SELEX
Nitta et al.(2015)
wor_1
0.759
0.832
wor
M03665_2.00
Drosophila melanogaster
DTRCACCTGTYGY
RCRACAGGTGYAH
SELEX
Nitta et al.(2015)
wor_2
0.759
0.832
wor
M06051_2.00
Drosophila melanogaster
CACCTGY
RCAGGTG
B1H
Zhu et al.(2011)
wor_SANGER_2.5_FBgn0001983
0.759
0.832
wor
M06052_2.00
Drosophila melanogaster
VCACCTGY
RCAGGTGB
B1H
Zhu et al.(2011)
wor_SOLEXA_2.5_FBgn0001983
0.759
0.832
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMAR001730-PA
C2H2 ZF
235
257
YQCPDCNKSYSTLSGLNKHQQFH
SMAR001730-PA
C2H2 ZF
266
288
FSCKYCDKIYVSLGALKMHIRTH
SMAR001730-PA
C2H2 ZF
292
314
CKCKLCGKAFSRPWLLQGHVRTH
SMAR001730-PA
C2H2 ZF
320
342
FACQHCNRAFADRSNLRAHLQTH
SMAR001730-PA
C2H2 ZF
348
368
YSCTNCSKTFSRMSLLVKHKD
Links
Other
C2H2 ZF
family TFs
Other
Strigamia maritima
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy