CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMAR013549
(
Strigamia maritima
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
SMAR013549
T129153_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
erm
M03686_2.00
Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA
SELEX
Nitta et al.(2015)
CG31670_1
0.814
0.913
erm
M06128_2.00
Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM
B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375
0.814
0.913
erm
M06129_2.00
Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV
B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375
0.814
0.913
FEZF1
M08307_2.00
Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN
ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE
0.804
0.913
FEZF1
M08889_2.00
Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH
Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C
0.804
0.913
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMAR013549-PA
C2H2 ZF
197
219
FSCSECGKIFNAHYNLTRHMPVH
SMAR013549-PA
C2H2 ZF
225
247
FVCKVCGKGFRQASTLCRHKIIH
SMAR013549-PA
C2H2 ZF
253
275
HKCVTCGKAFNRSSTLNTHMRIH
SMAR013549-PA
C2H2 ZF
281
303
FVCEFCGKGFHQKGNYKNHKLTH
SMAR013549-PA
C2H2 ZF
309
331
FKCQVCNKAFHQVYNLTFHMHTH
SMAR013549-PA
C2H2 ZF
337
360
FTCKLCGKGFCRNFDLKKHMRKLH
Links
Other
C2H2 ZF
family TFs
Other
Strigamia maritima
TFs
171 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy