Solyc06g065440.1 (Solanum lycopersicum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Solyc06g065440.1 T129373_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.774 0.889
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.774 0.889
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc06g065440.1.1 C2H2 ZF 269 291
Solyc06g065440.1.1 C2H2 ZF 290 321

Links

Other C2H2 ZF family TFs
Other Solanum lycopersicum TFs

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33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action