SPU_012448 (Strongylocentrotus purpuratus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 SPU_012448 T129615_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ovo
M03669_2.00
Drosophila melanogaster
DNMCCGTTA

TAACGGKNH
SELEX
Nitta et al.(2015)
ovo_1
0.774 0.797
ovo
M06064_2.00
Drosophila melanogaster
CHGTTAHW

WDTAACDG
B1H
Zhu et al.(2011)
ovo_FlyReg_FBgn0003028
0.774 0.797
ovo
M06065_2.00
Drosophila melanogaster
RGTHCCGTTAT

ATAACGGDACY
B1H
Zhu et al.(2011)
ovo_SANGER_5_FBgn0003028
0.774 0.797
ovo
M06066_2.00
Drosophila melanogaster
DDTMCCGTTABNYN

NRNVTAACGGKAHH
B1H
Zhu et al.(2011)
ovo_SOLEXA_5_FBgn0003028
0.774 0.797
ovo
M02671_2.00
Drosophila melanogaster
DCNGTTWSD

HSWAACNGH
SELEX
Mathelier et al.(2014)
MA0126.1
0.774 0.797
ovo
M09662_2.00
Drosophila melanogaster
DCNGTTAMWNNDV

BHNNWKTAACNGH
Misc
Kulakovskiy et al.(2009)
ovo
0.774 0.797
ovo
M10373_2.00
Drosophila melanogaster
NNNDCNGTTWSDDNN

NNHHSWAACNGHNNN
Transfac
Matys et al.(2006)
I$OVO_01
0.774 0.797
ovo
M10374_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$OVO_Q6
0.774 0.797
lin-48
M00614_2.00
Caenorhabditis elegans
HCCGTTAB

VTAACGGD
PBM
Narasimhan et al.(2015)
pTH9155
0.774 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SPU_012448-tr C2H2 ZF 727 749
SPU_012448-tr C2H2 ZF 755 777
SPU_012448-tr C2H2 ZF 783 806

Links

Other C2H2 ZF family TFs
Other Strongylocentrotus purpuratus TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30170.m014145 Ricinus communis 30170.m014145 I 0.000
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I 0.000
BPC6 Arabidopsis thaliana AT5G42520 D 0.000
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I 0.000
Carubv10026720m.g Capsella rubella Carubv10026720m.g I 0.000
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I 0.000
chr1.CM0195.10.nd Lotus japonicus chr1.CM0195.10.nd I 0.000
Ciclev10001400m.g Citrus clementina Ciclev10001400m.g I 0.000
Cla022781 Citrullus lanatus Cla022781 I 0.000
Cucsa.159750 Cucumis sativus Cucsa.159750 I 0.000
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I 0.000
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I 0.000
GLYMA04G02860 Glycine max GLYMA04G02860 I 0.000
GLYMA06G02880 Glycine max GLYMA06G02880 I 0.000
Gorai.002G124900 Gossypium raimondii Gorai.002G124900 I 0.000
Lus10012389.g Linum usitatissimum Lus10012389.g I 0.000
Lus10024313.g Linum usitatissimum Lus10024313.g I 0.000
MDP0000933138 Malus domestica MDP0000933138 I 0.000
MTR_1g023660 Medicago truncatula MTR_1g023660 I 0.000
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 0.000
orange1.1g018368m.g Citrus sinensis orange1.1g018368m.g I 0.000
PGSC0003DMG400003719 Solanum tuberosum PGSC0003DMG400003719 I 0.000
PK03443.1 Cannabis sativa PK03443.1 I 0.000
Pm006246 Prunus mume Pm006246 I 0.000
POPTR_0002s02820 Populus trichocarpa POPTR_0002s02820 I 0.000
POPTR_0005s25720 Populus trichocarpa POPTR_0005s25720 I 0.000
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I 0.000
SapurV1A.0025s0690 Salix purpurea SapurV1A.0025s0690 I 0.000
SapurV1A.0762s0100 Salix purpurea SapurV1A.0762s0100 I 0.000
Solyc04g081170.2 Solanum lycopersicum Solyc04g081170.2 I 0.000
TCM_034171 Theobroma cacao TCM_034171 I 0.000
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I 0.000
VIT_18s0001g13730 Vitis vinifera VIT_18s0001g13730 I 0.000