CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SPU_012645
(
Strongylocentrotus purpuratus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
SPU_012645
T129620_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.788
0.848
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN
NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.786
0.848
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.786
0.848
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS
SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.786
0.848
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY
RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.786
0.848
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY
RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.786
0.848
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.786
0.848
GFI1
M10236_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.786
0.848
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN
NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.786
0.848
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.786
0.848
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN
NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.783
0.833
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.783
0.833
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY
RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.783
0.833
GFI1B
M10243_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.783
0.833
GFI1B
M10244_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.783
0.833
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.783
0.833
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH
DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.781
0.826
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH
DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.781
0.826
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC
GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.781
0.826
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN
NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.773
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPU_012645-tr
C2H2 ZF
167
190
FNCLDCGKVFSTPHGLEVHVRRSH
SPU_012645-tr
C2H2 ZF
196
218
FACDICQKTFGHAVSLSQHRAVH
SPU_012645-tr
C2H2 ZF
224
246
FECKQCGKTFKRSSTLSTHMLIH
SPU_012645-tr
C2H2 ZF
252
274
YPCQYCGKRFHQKSDMKKHTYIH
SPU_012645-tr
C2H2 ZF
280
302
HKCLVCGKAFSQSSNLITHSRKH
SPU_012645-tr
C2H2 ZF
308
331
FGCKICGRAFQRKVDLRRHFETQH
Links
Other
C2H2 ZF
family TFs
Other
Strongylocentrotus purpuratus
TFs
138 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy