CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SPU_027491
(
Strongylocentrotus purpuratus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
SPU_027491
T129783_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FEZF1
M08307_2.00
Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN
ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE
0.790
0.891
FEZF1
M08889_2.00
Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH
Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C
0.790
0.891
erm
M03686_2.00
Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA
SELEX
Nitta et al.(2015)
CG31670_1
0.790
0.870
erm
M06128_2.00
Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM
B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375
0.790
0.870
erm
M06129_2.00
Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV
B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375
0.790
0.870
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPU_027491-tr
C2H2 ZF
313
335
FVCSECGKIFNAHYNLTRHMPVH
SPU_027491-tr
C2H2 ZF
341
363
FVCKVCGKGFRQASTLCRHKIIH
SPU_027491-tr
C2H2 ZF
369
391
HRCHECGKAFNRSSTLNTHMRIH
SPU_027491-tr
C2H2 ZF
397
419
FICEFCGKGFHQKGNYKNHRLTH
SPU_027491-tr
C2H2 ZF
425
447
FKCHICHKAFHQVYNLTFHMHTH
SPU_027491-tr
C2H2 ZF
453
476
FTCGICGKGFCRNFDLKKHTRKLH
Links
Other
C2H2 ZF
family TFs
Other
Strongylocentrotus purpuratus
TFs
168 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy