CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_022001
(
Theobroma cacao
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
TCM_022001
T130189_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN
NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.795
0.783
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN
NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.795
0.783
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.786
0.783
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.786
0.783
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.785
0.717
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN
NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.775
0.717
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.772
0.783
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.761
0.761
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY07613
C2H2 ZF
87
109
FECKTCHRRFPSFQALGGHRASH
EOY07613
C2H2 ZF
137
159
HECAICGKKFDLGQALGGHMRKH
Links
Other
C2H2 ZF
family TFs
Other
Theobroma cacao
TFs
348 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00110p00030150
Amborella trichopoda
AMTR_s00110p00030150
I
0.000
BGIOSGA017139
Oryza indica
BGIOSGA017139
N
0.000
Bra000283
Brassica rapa
Bra000283
I
0.000
BRADI5G21950
Brachypodium distachyon
BRADI5G21950
N
0.000
Cla018863
Citrullus lanatus
Cla018863
I
0.000
Cucsa.113040
Cucumis sativus
Cucsa.113040
I
0.000
estExt_fgenesh1_pg.C_680048
Physcomitrella patens
estExt_fgenesh1_pg.C_680048
I
0.000
estExt_fgenesh1_pg.C_690022
Physcomitrella patens
estExt_fgenesh1_pg.C_690022
I
0.000
e_gw1.84.236.1
Physcomitrella patens
e_gw1.84.236.1
I
0.000
F775_31091
Aegilops tauschii
F775_31091
N
0.000
GLYMA02G45150
Glycine max
GLYMA02G45150
I
0.000
GLYMA14G03600
Glycine max
GLYMA14G03600
I
0.000
GRMZM2G042920
Zea mays
GRMZM2G042920
N
0.000
GRMZM2G080054
Zea mays
GRMZM2G080054
N
0.000
gw1.147.92.1
Physcomitrella patens
gw1.147.92.1
I
0.000
Lus10020727.g
Linum usitatissimum
Lus10020727.g
I
0.000
Lus10029805.g
Linum usitatissimum
Lus10029805.g
I
0.000
MLOC_36345
Hordeum vulgare
MLOC_36345
N
0.000
OBART04G25920
Oryza barthii
OBART04G25920
N
0.000
OGLUM04G25420
Oryza glumaepatula
OGLUM04G25420
N
0.000
OMERI04G21140
Oryza meridionalis
OMERI04G21140
N
0.000
ONIVA04G24530
Oryza nivara
ONIVA04G24530
N
0.000
OPUNC04G23040
Oryza punctata
OPUNC04G23040
N
0.000
ORGLA04G0225800
Oryza glaberrima
ORGLA04G0225800
N
0.000
ORUFI04G27110
Oryza rufipogon
ORUFI04G27110
N
0.000
OS04G0618600
Oryza sativa
OS04G0618600
N
0.000
Pavir.Gb00491
Panicum virgatum
Pavir.Gb00491
N
0.000
Pavir.J18207
Panicum virgatum
Pavir.J18207
N
0.000
Sb06g028750
Sorghum bicolor
Sb06g028750
N
0.000
SELMODRAFT_114141
Selaginella moellendorffii
SELMODRAFT_114141
I
0.000
SELMODRAFT_116654
Selaginella moellendorffii
SELMODRAFT_116654
I
0.000
SELMODRAFT_118904
Selaginella moellendorffii
SELMODRAFT_118904
I
0.000
SELMODRAFT_29179
Selaginella moellendorffii
SELMODRAFT_29179
I
0.000
SELMODRAFT_39143
Selaginella moellendorffii
SELMODRAFT_39143
I
0.000
Si011759m.g
Setaria italica
Si011759m.g
N
0.000
Traes_2AL_67BC3AFBE
Triticum aestivum
Traes_2AL_67BC3AFBE
N
0.000
Traes_2BL_A1F9C66CA
Triticum aestivum
Traes_2BL_A1F9C66CA
N
0.000
Traes_2DL_0B1444B68
Triticum aestivum
Traes_2DL_0B1444B68
N
0.000
Traes_2DL_46C827FAC
Triticum aestivum
Traes_2DL_46C827FAC
N
0.000
Traes_2DL_46C827FAC1
Triticum aestivum
Traes_2DL_46C827FAC1
N
0.000
TRIUR3_18209
Triticum urartu
TRIUR3_18209
N
0.000