TCM_022001 (Theobroma cacao)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 TCM_022001 T130189_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.795 0.783
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN

NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.795 0.783
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.786 0.783
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN

NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.786 0.783
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.785 0.717
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.775 0.717
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH

DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.772 0.783
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN

NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.761 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY07613 C2H2 ZF 87 109
EOY07613 C2H2 ZF 137 159

Links

Other C2H2 ZF family TFs
Other Theobroma cacao TFs

348 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00110p00030150 Amborella trichopoda AMTR_s00110p00030150 I 0.000
BGIOSGA017139 Oryza indica BGIOSGA017139 N 0.000
Bra000283 Brassica rapa Bra000283 I 0.000
BRADI5G21950 Brachypodium distachyon BRADI5G21950 N 0.000
Cla018863 Citrullus lanatus Cla018863 I 0.000
Cucsa.113040 Cucumis sativus Cucsa.113040 I 0.000
estExt_fgenesh1_pg.C_680048 Physcomitrella patens estExt_fgenesh1_pg.C_680048 I 0.000
estExt_fgenesh1_pg.C_690022 Physcomitrella patens estExt_fgenesh1_pg.C_690022 I 0.000
e_gw1.84.236.1 Physcomitrella patens e_gw1.84.236.1 I 0.000
F775_31091 Aegilops tauschii F775_31091 N 0.000
GLYMA02G45150 Glycine max GLYMA02G45150 I 0.000
GLYMA14G03600 Glycine max GLYMA14G03600 I 0.000
GRMZM2G042920 Zea mays GRMZM2G042920 N 0.000
GRMZM2G080054 Zea mays GRMZM2G080054 N 0.000
gw1.147.92.1 Physcomitrella patens gw1.147.92.1 I 0.000
Lus10020727.g Linum usitatissimum Lus10020727.g I 0.000
Lus10029805.g Linum usitatissimum Lus10029805.g I 0.000
MLOC_36345 Hordeum vulgare MLOC_36345 N 0.000
OBART04G25920 Oryza barthii OBART04G25920 N 0.000
OGLUM04G25420 Oryza glumaepatula OGLUM04G25420 N 0.000
OMERI04G21140 Oryza meridionalis OMERI04G21140 N 0.000
ONIVA04G24530 Oryza nivara ONIVA04G24530 N 0.000
OPUNC04G23040 Oryza punctata OPUNC04G23040 N 0.000
ORGLA04G0225800 Oryza glaberrima ORGLA04G0225800 N 0.000
ORUFI04G27110 Oryza rufipogon ORUFI04G27110 N 0.000
OS04G0618600 Oryza sativa OS04G0618600 N 0.000
Pavir.Gb00491 Panicum virgatum Pavir.Gb00491 N 0.000
Pavir.J18207 Panicum virgatum Pavir.J18207 N 0.000
Sb06g028750 Sorghum bicolor Sb06g028750 N 0.000
SELMODRAFT_114141 Selaginella moellendorffii SELMODRAFT_114141 I 0.000
SELMODRAFT_116654 Selaginella moellendorffii SELMODRAFT_116654 I 0.000
SELMODRAFT_118904 Selaginella moellendorffii SELMODRAFT_118904 I 0.000
SELMODRAFT_29179 Selaginella moellendorffii SELMODRAFT_29179 I 0.000
SELMODRAFT_39143 Selaginella moellendorffii SELMODRAFT_39143 I 0.000
Si011759m.g Setaria italica Si011759m.g N 0.000
Traes_2AL_67BC3AFBE Triticum aestivum Traes_2AL_67BC3AFBE N 0.000
Traes_2BL_A1F9C66CA Triticum aestivum Traes_2BL_A1F9C66CA N 0.000
Traes_2DL_0B1444B68 Triticum aestivum Traes_2DL_0B1444B68 N 0.000
Traes_2DL_46C827FAC Triticum aestivum Traes_2DL_46C827FAC N 0.000
Traes_2DL_46C827FAC1 Triticum aestivum Traes_2DL_46C827FAC1 N 0.000
TRIUR3_18209 Triticum urartu TRIUR3_18209 N 0.000