CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TPHA_0H00790
(
Tetrapisispora phaffii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
TPHA_0H00790
T130512_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RPN4
M00017_2.00
Saccharomyces cerevisiae
NNCGCCACCN
NGGTGGCGNN
PBM
Badis et al.(2008)
RPN4_2137
0.797
0.927
RPN4
M01525_2.00
Saccharomyces cerevisiae
NWWWWWWWWN
NWWWWWWWWN
PBM
Zhu et al.(2009)
Rpn4
0.797
0.927
RPN4
M07447_2.00
Saccharomyces cerevisiae
CGCCACY
RGTGGCG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0373.1
0.797
0.927
RPN4
M08511_2.00
Saccharomyces cerevisiae
NNNRGTGGCRAM
KTYGCCACYNNN
Misc
DeBoer et al.(2011)
YDL020C_1700
0.797
0.927
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CCE64288
C2H2 ZF
499
517
CSAEFSRPYDLTRHQNTIH
CCE64288
C2H2 ZF
524
556
FRCSECIRSLGDDGFKKTFSRLDALTRHIKSKH
Links
Other
C2H2 ZF
family TFs
Other
Tetrapisispora phaffii
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy