CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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TYY2_RAT
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
TYY2_RAT
T130977_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TYY2_RAT
M10385_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY2
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YY1
M02877_2.00
Homo sapiens
NVSRCCATNDH
DHNATGGYSBN
SELEX
Jolma et al.(2013)
YY1_1
0.816
0.912
YY1
M04406_2.00
Homo sapiens
NDCCATYTTKRRBNDWNHGTGCK
MGCACDNWHNVYYMAARATGGHN
SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_1
0.816
0.912
YY1
M04407_2.00
Homo sapiens
NKMCGCCATYTTGN
NCAARATGGCGKMN
SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_2
0.816
0.912
YY1
M05845_2.00
Homo sapiens
NNNVGCCATNWYD
HRWNATGGCBNNN
SMiLE-seq
Isakova et al.(2017)
YY1
0.816
0.912
YY1
M08288_2.00
Homo sapiens
GCCGCCATBKYB
VRMVATGGCGGC
ChIP-seq
Schmitges et al.(2016)
P25490_1-4.RCADE
0.816
0.912
YY1
M08085_2.00
Homo sapiens
KCVGCCATBTTK
MAAVATGGCBGM
ChIP-seq
Mathelier et al.(2014)
MA0095.2
0.816
0.912
YY1
M07855_2.00
Homo sapiens
VNVGCCGCCATBTTK
MAAVATGGCGGCBNB
ChIP-seq
Gerstein et al.(2012)
GM12878_YY1_HudsonAlpha
0.816
0.912
YY1
M07856_2.00
Homo sapiens
GCSGCCATBTT
AAVATGGCSGC
ChIP-seq
Gerstein et al.(2012)
GM12891_YY1_HudsonAlpha
0.816
0.912
YY1
M07857_2.00
Homo sapiens
BSNVGCSGCCATBTT
AAVATGGCSGCBNSV
ChIP-seq
Gerstein et al.(2012)
GM12892_YY1_HudsonAlpha
0.816
0.912
YY1
M07858_2.00
Homo sapiens
NNVGCSGCCATBTTK
MAAVATGGCSGCBNN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_YY1_HudsonAlpha
0.816
0.912
YY1
M07859_2.00
Homo sapiens
SBSGCSGCCATBTTK
MAAVATGGCSGCSVS
ChIP-seq
Gerstein et al.(2012)
K562b_YY1_UCD
0.816
0.912
YY1
M07860_2.00
Homo sapiens
GCCGCCATBTTKNNN
NNNMAAVATGGCGGC
ChIP-seq
Gerstein et al.(2012)
K562_YY1_HudsonAlpha
0.816
0.912
YY1
M07861_2.00
Homo sapiens
VGCSGCCATBTTK
MAAVATGGCSGCB
ChIP-seq
Gerstein et al.(2012)
NT2-D1_YY1_UCD
0.816
0.912
YY1
M08237_2.00
Homo sapiens
VNVGCVGCCATBTTD
HAAVATGGCBGCBNB
ChIP-seq
Najafabadi et al.(2015b)
YY1
0.816
0.912
YY1
M08865_2.00
Homo sapiens
GCCGCCATYTTK
MAARATGGCGGC
Misc
Kulakovskiy et al.(2013)
TYY1_HUMAN.H11MO.0.A
0.816
0.912
Yy1
M08971_2.00
Mus musculus
GCCGCCATBTTB
VAAVATGGCGGC
Misc
Kulakovskiy et al.(2013)
TYY1_MOUSE.H11MO.0.A
0.816
0.912
YY1
M10138_2.00
Homo sapiens
NVNNDCCATNTWNNVWN
NWBNNWANATGGHNNBN
Transfac
Matys et al.(2006)
V$YY1_01
0.816
0.912
YY1
M10139_2.00
Homo sapiens
NNNSBGCCATCTDSNHTSND
HNSADNSHAGATGGCVSNNN
Transfac
Matys et al.(2006)
V$YY1_02
0.816
0.912
YY1
M10140_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_03
0.816
0.912
YY1
M10141_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_07
0.816
0.912
YY1
M10142_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_08
0.816
0.912
YY1
M10143_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q4_01
0.816
0.912
YY1
M10144_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6_02
0.816
0.912
YY1
M10145_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6_03
0.816
0.912
YY1
M10146_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6
0.816
0.912
YY1
M04408_2.00
Homo sapiens
NDCCATYTTKRRCDDWWHGTGCY
RGCACDWWHHGYYMAARATGGHN
SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_1
0.816
0.912
YY1
M04409_2.00
Homo sapiens
RKCSGCCATYTTGD
HCAARATGGCSGMY
SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_2
0.816
0.912
pho
M06053_2.00
Drosophila melanogaster
KNVGCCATDAHNSY
RSNDTHATGGCBNM
B1H
Zhu et al.(2011)
pho_FlyReg_FBgn0002521
0.804
0.912
pho
M06054_2.00
Drosophila melanogaster
KCCGCCATHWTK
MAWDATGGCGGM
B1H
Zhu et al.(2011)
pho_SANGER_10_FBgn0002521
0.804
0.912
pho
M06055_2.00
Drosophila melanogaster
NKBCGCCATHWTKNN
NNMAWDATGGCGVMN
B1H
Zhu et al.(2011)
pho_SOLEXA_5_FBgn0002521
0.804
0.912
phol
M06144_2.00
Drosophila melanogaster
CGCCATHTTK
MAADATGGCG
B1H
Zhu et al.(2011)
phol_SANGER_5_FBgn0035997
0.759
0.769
phol
M06145_2.00
Drosophila melanogaster
NKNCGCCATNTTKNN
NNMAANATGGCGNMN
B1H
Zhu et al.(2011)
phol_SOLEXA_5_FBgn0035997
0.759
0.769
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
TYY2_RAT
C2H2 ZF
259
282
ACSHKGCGKMFKDNSAMRKHLHIH
TYY2_RAT
C2H2 ZF
287
309
HVCAECGKAFVESSKLKRHQLVH
TYY2_RAT
C2H2 ZF
315
339
YQCTFEGCGRRFSLDFNLRTHVRIH
TYY2_RAT
C2H2 ZF
345
369
FVCPFDACNKKFAQSTNLKSHILTH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
162 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Yy2
Mus musculus
ENSMUSG00000091736
I
0.827
Mbtps2
Mus musculus
ENSMUSG00000046873
I
0.827
YY2
Tupaia belangeri
ENSTBEG00000011527
I
0.821
NEMVEDRAFT_v1g118750
Nematostella vectensis
NEMVEDRAFT_v1g118750
I
0.819
CpipJ_CPIJ014689
Culex pipiens
CpipJ_CPIJ014689
I
0.816
ENSXMAG00000008440
Xiphophorus maculatus
ENSXMAG00000008440
I
0.816
ENSXMAG00000013413
Xiphophorus maculatus
ENSXMAG00000013413
I
0.816
GB49343
Apis mellifera
GB49343
I
0.816
HMEL010415
Heliconius melpomene
HMEL010415
I
0.816
RPRC009167
Rhodnius prolixus
RPRC009167
I
0.816
SINV16765
Solenopsis invicta
SINV16765
I
0.816
NV10061
Nasonia vitripennis
NV10061
I
0.816
L798_03352
Zootermopsis nevadensis
L798_03352
I
0.816
KGM_02499
Danaus plexippus
KGM_02499
I
0.816
YY2
Takifugu rubripes
ENSTRUG00000010532
I
0.816
ENSTGUG00000012753
Taeniopygia guttata
ENSTGUG00000012753
I
0.816
ENSPSIG00000016003
Pelodiscus sinensis
ENSPSIG00000016003
I
0.816
YY1
Pan troglodytes
ENSPTRG00000006717
I
0.816
ENSPPYG00000025949
Pongo abelii
ENSPPYG00000025949
I
0.816
ENSPMAG00000006025
Petromyzon marinus
ENSPMAG00000006025
I
0.816
ENSPFOG00000007704
Poecilia formosa
ENSPFOG00000007704
I
0.816
Yy1
Rattus norvegicus
ENSRNOG00000004339
I
0.816
ENSSHAG00000014750
Sarcophilus harrisii
ENSSHAG00000014750
I
0.816
YY2
Tetraodon nigroviridis
ENSTNIG00000010738
I
0.816
SMAR005684
Strigamia maritima
SMAR005684
I
0.816
ENSSSCG00000030865
Sus scrofa
ENSSSCG00000030865
I
0.816
ENSSSCG00000030818
Sus scrofa
ENSSSCG00000030818
I
0.816
yy1a
Tetraodon nigroviridis
ENSTNIG00000017334
I
0.816
SPU_010295
Strongylocentrotus purpuratus
SPU_010295
I
0.816
yy1.L
Xenopus laevis
XB-GENE-6254435
I
0.816
yy1
Xenopus tropicalis
XB-GENE-961263
I
0.816
HHAL002529-PA
Halyomorpha halys
HHAL002529-PA
I
0.816
CLEC004566
Cimex lectularius
CLEC004566
I
0.816
gw.8.511.1
Branchiostoma floridae
gw.8.511.1
I
0.816
Sakowv30026333m.g
Saccoglossus kowalevskii
Sakowv30026333m.g
I
0.816
yy1.S
Xenopus laevis
XB-GENE-961267
I
0.816
AALB001578
Anopheles albimanus
AALB001578
I
0.816
LLOJ009958
Lutzomyia longipalpis
LLOJ009958
I
0.816
PPAI004379
Phlebotomus papatasi
PPAI004379
I
0.816
ASIS015128
Anopheles sinensis
ASIS015128
I
0.816
AMEC007067
Anopheles melas
AMEC007067
I
0.816
AFUN003297
Anopheles funestus
AFUN003297
I
0.816
e_gw.8.110.1
Branchiostoma floridae
e_gw.8.110.1
I
0.816
yakG036002
Bos grunniens
yakG036002
I
0.816
Afo_R004638
Aptenodytes forsteri
Afo_R004638
I
0.816
Alligator_sinensis_CCG004251.1
Alligator sinensis
Alligator_sinensis_CCG004251.1
I
0.816
Aan_R011513
Calypte anna
Aan_R011513
I
0.816
YQE_09404
Dendroctonus ponderosae
YQE_09404
I
0.816
TC015577
Tribolium castaneum
TC015577
I
0.816
Brh_R004031
Buceros rhinoceros
Brh_R004031
I
0.816
Cflo_10375--XP_392196.2_APIME
Camponotus floridanus
Cflo_10375--XP_392196.2_APIME
I
0.816
Pvit_14266
Pogona vitticeps
Pvit_14266
I
0.816
Tal_R000269
Tyto alba
Tal_R000269
I
0.816
Myotis_brandtii_YY1_10025332
Myotis brandtii
Myotis_brandtii_YY1_10025332
I
0.816
Gfo_R006742
Geospiza fortis
Gfo_R006742
I
0.816
Cflo_15890--XP_392196.2_APIME
Camponotus floridanus
Cflo_15890--XP_392196.2_APIME
I
0.816
ENSPFOG00000002300
Poecilia formosa
ENSPFOG00000002300
I
0.816
yy1a
Takifugu rubripes
ENSTRUG00000012579
I
0.816
ENSFALG00000002683
Ficedula albicollis
ENSFALG00000002683
I
0.816
YY1
Felis catus
ENSFCAG00000024327
I
0.816
YY2
Echinops telfairi
ENSETEG00000010999
I
0.816
ENSECAG00000005805
Equus caballus
ENSECAG00000005805
I
0.816
yy1a
Danio rerio
ENSDARG00000042796
I
0.816
ENSDNOG00000023949
Dasypus novemcinctus
ENSDNOG00000023949
I
0.816
YY1
Homo sapiens
ENSG00000100811
D
0.816
yy1a
Gasterosteus aculeatus
ENSGACG00000008573
I
0.816
ENSGMOG00000011803
Gadus morhua
ENSGMOG00000011803
I
0.816
ENSLAFG00000032414
Loxodonta africana
ENSLAFG00000032414
I
0.816
ENSGMOG00000010949
Gadus morhua
ENSGMOG00000010949
I
0.816
YY1
Gorilla gorilla
ENSGGOG00000026332
I
0.816
ENSGACG00000012595
Gasterosteus aculeatus
ENSGACG00000012595
I
0.816
ENSPANG00000009274
Papio anubis
ENSPANG00000009274
I
0.816
yy1b
Danio rerio
ENSDARG00000027978
I
0.816
ENSCPOG00000020809
Cavia porcellus
ENSCPOG00000020809
I
0.816
CPIJ014689
Culex quinquefasciatus
CPIJ014689
I
0.816
DAPPUDRAFT_59123
Daphnia pulex
DAPPUDRAFT_59123
I
0.816
BGIBMGA011179
Bombyx mori
BGIBMGA011179
I
0.816
ADAC004141
Anopheles darlingi
ADAC004141
I
0.816
ACEP14480
Atta cephalotes
ACEP14480
I
0.816
ACYPI007734
Acyrthosiphon pisum
ACYPI007734
I
0.816
ENSACAG00000013402
Anolis carolinensis
ENSACAG00000013402
I
0.816
ENSAMEG00000011146
Ailuropoda melanoleuca
ENSAMEG00000011146
I
0.816
YY1
Canis familiaris
ENSCAFG00000017894
I
0.816
ENSCJAG00000016853
Callithrix jacchus
ENSCJAG00000016853
I
0.816
YY1
Bos taurus
ENSBTAG00000020819
I
0.816
ENSAPLG00000003589
Anas platyrhynchos
ENSAPLG00000003589
I
0.816
ENSAMXG00000006146
Astyanax mexicanus
ENSAMXG00000006146
I
0.816
ENSAMXG00000013302
Astyanax mexicanus
ENSAMXG00000013302
I
0.816
ENSLOCG00000011626
Lepisosteus oculatus
ENSLOCG00000011626
I
0.816
YY1
Gallus gallus
ENSGALG00000017388
I
0.816
Yy1
Mus musculus
ENSMUSG00000021264
D
0.816
ENSNLEG00000000999
Nomascus leucogenys
ENSNLEG00000000999
I
0.816
ENSMPUG00000002931
Mustela putorius furo
ENSMPUG00000002931
I
0.816
ENSMODG00000013124
Monodelphis domestica
ENSMODG00000013124
I
0.816
ENSMLUG00000024984
Myotis lucifugus
ENSMLUG00000024984
I
0.816
YY2
Macaca mulatta
ENSMMUG00000029197
I
0.816
ENSOANG00000005723
Ornithorhynchus anatinus
ENSOANG00000005723
I
0.816
ENSOCUG00000026938
Oryctolagus cuniculus
ENSOCUG00000026938
I
0.816
YY2
Oryzias latipes
ENSORLG00000009449
I
0.816
yy1a
Oryzias latipes
ENSORLG00000015640
I
0.816
ENSONIG00000020108
Oreochromis niloticus
ENSONIG00000020108
I
0.816
ENSONIG00000000896
Oreochromis niloticus
ENSONIG00000000896
I
0.816
ENSOGAG00000006955
Otolemur garnettii
ENSOGAG00000006955
I
0.816
ENSMGAG00000013304
Meleagris gallopavo
ENSMGAG00000013304
I
0.816
YY1
Microcebus murinus
ENSMICG00000006698
I
0.816
LCUP013338
Lucilia cuprina
LCUP013338
I
0.814
PHUM284920
Pediculus humanus
PHUM284920
I
0.813
GG16416
Drosophila erecta
FBgn0108648
I
0.804
GH23956
Drosophila grimshawi
FBgn0131413
I
0.804
Ocbimv22034269m.g
Octopus bimaculoides
Ocbimv22034269m.g
I
0.804
GJ12430
Drosophila virilis
FBgn0199672
I
0.804
GM13006
Drosophila sechellia
FBgn0167937
I
0.804
GE14485
Drosophila yakuba
FBgn0232089
I
0.804
CapteG223122
Capitella teleta
CapteG223122
I
0.804
CGI_10027862
Crassostrea gigas
CGI_10027862
I
0.804
pho
Drosophila melanogaster
FBgn0002521
D
0.804
GK13655
Drosophila willistoni
FBgn0215663
I
0.804
LotgiG64240
Lottia gigantea
LotgiG64240
I
0.804
tetur09g00130
Tetranychus urticae
tetur09g00130
I
0.804
tetur09g00290
Tetranychus urticae
tetur09g00290
I
0.804
pho
Drosophila simulans
FBgn0067492
I
0.804
YY2
Erinaceus europaeus
ENSEEUG00000010704
I
0.804
ENSDORG00000009642
Dipodomys ordii
ENSDORG00000009642
I
0.804
Ogr05382
Ophisaurus gracilis
Ogr05382
I
0.802
Cmyd_10012120
Chelonia mydas
Cmyd_10012120
I
0.802
ENSAMEG00000016465
Ailuropoda melanoleuca
ENSAMEG00000016465
I
0.801
YY2
Equus caballus
ENSECAG00000014804
I
0.799
TsM_000985500
Taenia solium
TsM_000985500
I
0.794
HNAJ_0000292901
Hymenolepis nana
HNAJ_0000292901
I
0.794
TASK_0000670101
Taenia asiatica
TASK_0000670101
I
0.794
HmN_000280700
Hymenolepis microstoma
HmN_000280700
I
0.794
EmuJ_000476600
Echinococcus multilocularis
EmuJ_000476600
I
0.794
ECANG7_03870
Echinococcus canadensis
ECANG7_03870
I
0.794
TTAC_0000757501
Hydatigera taeniaeformis
TTAC_0000757501
I
0.794
T265_10224
Opisthorchis viverrini
T265_10224
I
0.790
csin103138
Clonorchis sinensis
csin103138
I
0.790
YY2
Monodelphis domestica
ENSMODG00000028019
I
0.787
D915_12088
Fasciola hepatica
D915_12088
I
0.785
ECPE_0001146401
Echinostoma caproni
ECPE_0001146401
I
0.785
A_01567
Schistosoma haematobium
A_01567
I
0.785
TRE_0001085901
Trichobilharzia regenti
TRE_0001085901
I
0.785
Smp_023990
Schistosoma mansoni
Smp_023990
I
0.785
SROB_0002127201
Schistosoma rodhaini
SROB_0002127201
I
0.785
SCUD_0001683801
Schistosoma curassoni
SCUD_0001683801
I
0.785
SMTD_0001163901
Schistosoma mattheei
SMTD_0001163901
I
0.785
MCOS_0000134601
Mesocestoides corti
MCOS_0000134601
I
0.784
DILT_0000781101
Diphyllobothrium latum
DILT_0000781101
I
0.784
ENSSHAG00000010068
Sarcophilus harrisii
ENSSHAG00000010068
I
0.775
GF24664
Drosophila ananassae
FBgn0101657
I
0.759
GH16213
Drosophila grimshawi
FBgn0123684
I
0.759
GI13359
Drosophila mojavensis
FBgn0136116
I
0.759
GG14036
Drosophila erecta
FBgn0106298
I
0.759
GA17456
Drosophila pseudoobscura
FBgn0077467
I
0.759
phol
Drosophila melanogaster
FBgn0035997
D
0.759
GL17968
Drosophila persimilis
FBgn0155571
I
0.759
GM24870
Drosophila sechellia
FBgn0179732
I
0.759
GE21239
Drosophila yakuba
FBgn0238511
I
0.759
GK20506
Drosophila willistoni
FBgn0222503
I
0.759
GJ13188
Drosophila virilis
FBgn0200414
I
0.759
GD12921
Drosophila simulans
FBgn0184646
I
0.759
LCUP010826
Lucilia cuprina
LCUP010826
I
0.757
MDOA004058
Musca domestica
MDOA004058
I
0.757