VIT_09s0054g01820 (Vitis vinifera)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 VIT_09s0054g01820 T131473_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.769 0.854
id1
M02672_2.00
Zea mays
TBKYYBYTHBYG

CRVDARVRRMVA
SELEX
Mathelier et al.(2014)
MA0120.1
0.762 0.756
id1
M10380_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ID1_01
0.762 0.756
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_09s0054g01820.t01 C2H2 ZF 82 103
VIT_09s0054g01820.t01 C2H2 ZF 104 128

Links

Other C2H2 ZF family TFs
Other Vitis vinifera TFs

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178 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action