che-1 (Caenorhabditis elegans)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 WBGene00000483 T131550_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
che-1
M00609_2.00		 Caenorhabditis elegans
NGAARCCHNN
NNDGGYTTCN		 PBM
Narasimhan et al.(2015)
pTH10015		 (Direct) (Direct)
che-1
M08451_2.00		 Caenorhabditis elegans
SGYTTC
GAARCS		 COMPILED
Mathelier et al.(2014)
MA0260.1		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00609_2.00 C2H2 ZF 51 73
M00609_2.00 C2H2 ZF 79 101
M00609_2.00 C2H2 ZF 107 129
M00609_2.00 C2H2 ZF 135 157

DNA Binding Domains

Protein ID Domain From To Sequence
C55B7.12a C2H2 ZF 107 129
C55B7.12a C2H2 ZF 135 157
C55B7.12a C2H2 ZF 163 185
C55B7.12a C2H2 ZF 191 213
C55B7.12b C2H2 ZF 166 188
C55B7.12b C2H2 ZF 194 216
C55B7.12b C2H2 ZF 222 244
C55B7.12b C2H2 ZF 250 272

Links

Other C2H2 ZF family TFs
Other Caenorhabditis elegans TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE23561 Caenorhabditis remanei CRE23561 I 0.827
CBN30944 Caenorhabditis brenneri CBN30944 I 0.827
CBG12674 Caenorhabditis briggsae CBG12674 I 0.825
NBR_0000131901 Nippostrongylus brasiliensis NBR_0000131901 I 0.770
maker-nMf.1.1.scaf05782-augustus-gene-0.8 Meloidogyne floridensis maker-nMf.1.1.scaf05782-augustus-gene-0.8 I 0.770
HPLM_0001518701 Haemonchus placei HPLM_0001518701 I 0.770
Minc12570 Meloidogyne incognita Minc12570 I 0.770
NECAME_14596 Necator americanus NECAME_14596 I 0.769
TCNE_0000019201 Toxocara canis TCNE_0000019201 I 0.767
scaffold142-EXSNAP2012.10 Pristionchus exspectatus scaffold142-EXSNAP2012.10 I 0.758