lin-29 (Caenorhabditis elegans)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 WBGene00003015 T131559_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lin-29
M00613_2.00		 Caenorhabditis elegans
WTTTTTTN
NAAAAAAW		 PBM
Narasimhan et al.(2015)
pTH9930		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00613_2.00 C2H2 ZF 51 73
M00613_2.00 C2H2 ZF 81 102
M00613_2.00 C2H2 ZF 108 132
M00613_2.00 C2H2 ZF 138 160
M00613_2.00 C2H2 ZF 169 191

DNA Binding Domains

Protein ID Domain From To Sequence
W03C9.4a C2H2 ZF 151 173
W03C9.4a C2H2 ZF 181 202
W03C9.4a C2H2 ZF 208 232
W03C9.4a C2H2 ZF 238 260
W03C9.4a C2H2 ZF 269 291
W03C9.4b C2H2 ZF 147 169
W03C9.4b C2H2 ZF 177 198
W03C9.4b C2H2 ZF 204 228
W03C9.4b C2H2 ZF 234 256
W03C9.4b C2H2 ZF 265 287
W03C9.4c C2H2 ZF 9 31
W03C9.4c C2H2 ZF 39 60
W03C9.4c C2H2 ZF 66 90
W03C9.4c C2H2 ZF 96 118
W03C9.4c C2H2 ZF 127 149

Links

Other C2H2 ZF family TFs
Other Caenorhabditis elegans TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG02753 Caenorhabditis briggsae CBG02753 I 0.827
CRE02078 Caenorhabditis remanei CRE02078 I 0.827
CJA15666 Caenorhabditis japonica CJA15666 I 0.819
ANCCEY_04897 Ancylostoma ceylanicum ANCCEY_04897 I 0.785
HCOI02104300 Haemonchus contortus HCOI02104300 I 0.785
CBN14672 Caenorhabditis brenneri CBN14672 I 0.771
CBN28055 Caenorhabditis brenneri CBN28055 I 0.771
scaffold942-EXSNAP2012.1 Pristionchus exspectatus scaffold942-EXSNAP2012.1 I 0.768
scaffold83-EXSNAP2012.3 Pristionchus exspectatus scaffold83-EXSNAP2012.3 I 0.768
Ppa-lin-29 Pristionchus pacificus PPA19410 I 0.768
nRc.2.0.1.g29712 Romanomermis culicivorax nRc.2.0.1.g29712 I 0.766