CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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sptf-3
(
Caenorhabditis elegans
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
WBGene00012735
T131606_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription factor activity, RNA polymerase II-specific and chromatin binding activity. Involved in several processes, including generation of neurons; nematode larval development; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including MSpaa; g1AR; hypodermal cell; pharyngeal cell; and somatic nervous system. Orthologous to human SP6 (Sp6 transcription factor). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sptf-3
M00632_2.00
Caenorhabditis elegans
NNMCGCCCMY
RKGGGCGKNN
PBM
Narasimhan et al.(2015)
pTH9394
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sp1
M00765_2.00
Mus musculus
NMCGCCCMY
RKGGGCGKN
PBM
Weirauch et al.(2013)
pTH0978
0.766
0.754
SP1
M02921_2.00
Homo sapiens
RCCMCDCCCMH
DKGGGHGKGGY
SELEX
Jolma et al.(2013)
SP1_1
0.766
0.754
SP1
M04605_2.00
Homo sapiens
NWRRCCACGCCCMCH
DGKGGGCGTGGYYWN
SELEX
Yin et al.(2017)
SP1_eDBD_HT-SELEX
0.766
0.754
SP1
M08096_2.00
Homo sapiens
BYCCCKCCCCY
RGGGGMGGGRV
ChIP-seq
Mathelier et al.(2014)
MA0079.3
0.766
0.754
SP1
M08363_2.00
Homo sapiens
CCCHNBCYCCDCCCY
RGGGHGGRGVNDGGG
ChIP-seq
Schmitges et al.(2016)
P08047.MEME
0.766
0.754
SP1
M08938_2.00
Homo sapiens
BCSSSBCCHVGCCCCGCCCCYN
NRGGGGCGGGGCBDGGVSSSGV
Misc
Kulakovskiy et al.(2013)
SP1_HUMAN.H11MO.0.A
0.766
0.754
Sp1
M08963_2.00
Mus musculus
CCCBKCYCCKCCCCCNBCYCSBSC
GSVSGRGVNGGGGGMGGRGMVGGG
Misc
Kulakovskiy et al.(2013)
SP1_MOUSE.H11MO.0.A
0.766
0.754
SP1
M10294_2.00
Homo sapiens
DSCMHGCCYH
DRGGCDKGSH
Transfac
Matys et al.(2006)
V$SP1_01
0.766
0.754
SP1
M10295_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_02
0.766
0.754
SP1
M10296_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_07
0.766
0.754
SP1
M10297_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_08
0.766
0.754
SP1
M10298_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_Q2_02
0.766
0.754
SP1
M10299_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_Q3
0.766
0.754
SP1
M10300_2.00
Homo sapiens
VVCCCCGCCCMBN
NVKGGGCGGGGBB
Transfac
Matys et al.(2006)
V$SP1_Q6
0.766
0.754
SP1
M04606_2.00
Homo sapiens
NWRGCCMCGCCCMYH
DRKGGGCGKGGCYWN
SELEX
Yin et al.(2017)
SP1_eDBD_Methyl-HT-SELEX
0.766
0.754
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00632_2.00
C2H2 ZF
51
73
HICHLCNKTYGKTSHLRAHLRGH
M00632_2.00
C2H2 ZF
79
103
FACDWQHCNKKFTRSDELQRHRRTH
M00632_2.00
C2H2 ZF
109
131
FACNHCGKKFMRSDHLTKHERTH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Y40B1A.4
C2H2 ZF
316
338
HICHLCNKTYGKTSHLRAHLRGH
Y40B1A.4
C2H2 ZF
344
368
FACDWQHCNKKFTRSDELQRHRRTH
Y40B1A.4
C2H2 ZF
374
396
FACNHCGKKFMRSDHLTKHERTH
Links
Other
C2H2 ZF
family TFs
Other
Caenorhabditis elegans
TFs
127 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy