sptf-3 (Caenorhabditis elegans)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 WBGene00012735 T131606_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
sptf-3
M00632_2.00
Caenorhabditis elegans
NNMCGCCCMY

RKGGGCGKNN
PBM
Narasimhan et al.(2015)
pTH9394
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Sp1
M00765_2.00
Mus musculus
NMCGCCCMY

RKGGGCGKN
PBM
Weirauch et al.(2013)
pTH0978
0.766 0.754
SP1
M02921_2.00
Homo sapiens
RCCMCDCCCMH

DKGGGHGKGGY
SELEX
Jolma et al.(2013)
SP1_1
0.766 0.754
SP1
M04605_2.00
Homo sapiens
NWRRCCACGCCCMCH

DGKGGGCGTGGYYWN
SELEX
Yin et al.(2017)
SP1_eDBD_HT-SELEX
0.766 0.754
SP1
M08096_2.00
Homo sapiens
BYCCCKCCCCY

RGGGGMGGGRV
ChIP-seq
Mathelier et al.(2014)
MA0079.3
0.766 0.754
SP1
M08363_2.00
Homo sapiens
CCCHNBCYCCDCCCY

RGGGHGGRGVNDGGG
ChIP-seq
Schmitges et al.(2016)
P08047.MEME
0.766 0.754
SP1
M08938_2.00
Homo sapiens
BCSSSBCCHVGCCCCGCCCCYN

NRGGGGCGGGGCBDGGVSSSGV
Misc
Kulakovskiy et al.(2013)
SP1_HUMAN.H11MO.0.A
0.766 0.754
Sp1
M08963_2.00
Mus musculus
CCCBKCYCCKCCCCCNBCYCSBSC

GSVSGRGVNGGGGGMGGRGMVGGG
Misc
Kulakovskiy et al.(2013)
SP1_MOUSE.H11MO.0.A
0.766 0.754
SP1
M10294_2.00
Homo sapiens
DSCMHGCCYH

DRGGCDKGSH
Transfac
Matys et al.(2006)
V$SP1_01
0.766 0.754
SP1
M10295_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_02
0.766 0.754
SP1
M10296_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_07
0.766 0.754
SP1
M10297_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_08
0.766 0.754
SP1
M10298_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_Q2_02
0.766 0.754
SP1
M10299_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP1_Q3
0.766 0.754
SP1
M10300_2.00
Homo sapiens
VVCCCCGCCCMBN

NVKGGGCGGGGBB
Transfac
Matys et al.(2006)
V$SP1_Q6
0.766 0.754
SP1
M04606_2.00
Homo sapiens
NWRGCCMCGCCCMYH

DRKGGGCGKGGCYWN
SELEX
Yin et al.(2017)
SP1_eDBD_Methyl-HT-SELEX
0.766 0.754
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00632_2.00 C2H2 ZF 51 73
M00632_2.00 C2H2 ZF 79 103
M00632_2.00 C2H2 ZF 109 131

DNA Binding Domains

Protein ID Domain From To Sequence
Y40B1A.4 C2H2 ZF 316 338
Y40B1A.4 C2H2 ZF 344 368
Y40B1A.4 C2H2 ZF 374 396

Links

Other C2H2 ZF family TFs
Other Caenorhabditis elegans TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL003875 Aedes aegypti AAEL003875 I 0.757
AALB008691 Anopheles albimanus AALB008691 I 0.757
Aan_R009568 Calypte anna Aan_R009568 I 0.766
AARA006360 Anopheles arabiensis AARA006360 I 0.757
AATE004178 Anopheles atroparvus AATE004178 I 0.757
ACHR002282 Anopheles christyi ACHR002282 I 0.757
ACOC_0001203801 Angiostrongylus costaricensis ACOC_0001203801 I 0.820
ACUA022057 Anopheles culicifacies ACUA022057 I 0.760
ACYPI008586 Acyrthosiphon pisum ACYPI008586 I 0.764
ADAC004751 Anopheles darlingi ADAC004751 I 0.757
AFAF018385 Anopheles farauti AFAF018385 I 0.757
AFUN009419 Anopheles funestus AFUN009419 I 0.757
AGAP004438 Anopheles gambiae AGAP004438 I 0.757
Alligator_sinensis_CCG005388.1 Alligator sinensis Alligator_sinensis_CCG005388.1 I 0.766
ALUE_0000441701 Ascaris lumbricoides ALUE_0000441701 I 0.820
AMAM018005 Anopheles maculatus AMAM018005 I 0.760
AMEM016115 Anopheles merus AMEM016115 I 0.757
ANCCAN_00594 Ancylostoma caninum ANCCAN_00594 I 0.820
ANCCEY_05940 Ancylostoma ceylanicum ANCCEY_05940 I 0.820
ANCDUO_10264 Ancylostoma duodenale ANCDUO_10264 I 0.820
AQUA008497 Anopheles quadriannulatus AQUA008497 I 0.757
ASIM_0001129301 Anisakis simplex ASIM_0001129301 I 0.791
ASIS011603 Anopheles sinensis ASIS011603 I 0.757
ASTEI04919 Anopheles stephensi ASTEI04919 I 0.757
ASU_13052 Ascaris suum ASU_13052 I 0.820
augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0 I 0.786
BGLB011938 Biomphalaria glabrata BGLB011938 I 0.770
Bm6499 Brugia malayi Bm6499 I 0.824
BTMF_0000199301 Brugia timori BTMF_0000199301 I 0.824
BXY_0564300 Bursaphelenchus xylophilus BXY_0564300 I 0.767
CapteG112714 Capitella teleta CapteG112714 I 0.773
CBG20386 Caenorhabditis briggsae CBG20386 I 0.811
Cflo_10237--XP_624316.2_APIME Camponotus floridanus Cflo_10237--XP_624316.2_APIME I 0.763
CGI_10013026 Crassostrea gigas CGI_10013026 I 0.763
CLEC006997 Cimex lectularius CLEC006997 I 0.757
Cmyd_10006878 Chelonia mydas Cmyd_10006878 I 0.766
CPIJ003609 Culex quinquefasciatus CPIJ003609 I 0.757
CpipJ_CPIJ003609 Culex pipiens CpipJ_CPIJ003609 I 0.757
CRE28577 Caenorhabditis remanei CRE28577 I 0.827
D917_06327 Trichinella nativa D917_06327 I 0.756
DICVIV_09031 Dictyocaulus viviparus DICVIV_09031 I 0.804
DME_0000423301 Dracunculus medinensis DME_0000423301 I 0.784
EEL_0000517301 Elaeophora elaphi EEL_0000517301 I 0.824
EFV52785 Trichinella spiralis EFV52785 I 0.756
SP1 Anolis carolinensis ENSACAG00000000610 I 0.766
ENSAMEG00000012479 Ailuropoda melanoleuca ENSAMEG00000012479 I 0.766
ENSAPLG00000007170 Anas platyrhynchos ENSAPLG00000007170 I 0.766
SP1 Bos taurus ENSBTAG00000003021 I 0.766
ENSBTAP00000003929-D1 Bos grunniens ENSBTAP00000003929-D1 I 0.766
SP1 Canis familiaris ENSCAFG00000006950 I 0.766
SP1 Choloepus hoffmanni ENSCHOG00000001703 I 0.766
SP1 Callithrix jacchus ENSCJAG00000018553 I 0.766
SP1 Cavia porcellus ENSCPOG00000023095 I 0.766
ENSCSAG00000005498 Chlorocebus sabaeus ENSCSAG00000005498 I 0.766
SP1 Dasypus novemcinctus ENSDNOG00000017346 I 0.766
ENSECAG00000020197 Equus caballus ENSECAG00000020197 I 0.766
SP1 Erinaceus europaeus ENSEEUG00000013568 I 0.766
SP1 Felis catus ENSFCAG00000030741 I 0.766
SP1 Homo sapiens ENSG00000185591 D 0.766
ENSGALG00000028401 Gallus gallus ENSGALG00000028401 I 0.766
SP1 Gorilla gorilla ENSGGOG00000012593 I 0.766
SP1 Loxodonta africana ENSLAFG00000018043 I 0.766
ENSMEUG00000004493 Macropus eugenii ENSMEUG00000004493 I 0.766
SP1 Myotis lucifugus ENSMLUG00000017303 I 0.766
SP1 Macaca mulatta ENSMMUG00000020036 I 0.766
ENSMMUP00000026353 Macaca fascicularis ENSMMUP00000026353 I 0.766
Sp1 Mus musculus ENSMUSG00000001280 D 0.766
ENSNLEG00000017699 Nomascus leucogenys ENSNLEG00000017699 I 0.766
ENSOARG00000016514 Ovis aries ENSOARG00000016514 I 0.766
SP1 Oryctolagus cuniculus ENSOCUG00000004147 I 0.766
ENSONIG00000005121 Oreochromis niloticus ENSONIG00000005121 I 0.766
SP1 Ochotona princeps ENSOPRG00000000691 I 0.766
sp1 Oryzias latipes ENSORLG00000005195 I 0.766
ENSPANG00000018241 Papio anubis ENSPANG00000018241 I 0.766
SP1 Procavia capensis ENSPCAG00000004934 I 0.766
ENSPFOG00000007682 Poecilia formosa ENSPFOG00000007682 I 0.766
ENSPMAG00000000389 Petromyzon marinus ENSPMAG00000000389 I 0.759
ENSPPYG00000004579 Pongo abelii ENSPPYG00000004579 I 0.766
ENSPSIG00000007013 Pelodiscus sinensis ENSPSIG00000007013 I 0.766
SP1 Pan troglodytes ENSPTRG00000005014 I 0.766
SP1 Pteropus vampyrus ENSPVAG00000012280 I 0.766
Sp1 Rattus norvegicus ENSRNOG00000014084 I 0.766
SP1 Sorex araneus ENSSARG00000013480 I 0.766
SP1 Sus scrofa ENSSSCG00000000272 I 0.766
ENSSTOG00000005928 Ictidomys tridecemlineatus ENSSTOG00000005928 I 0.766
SP1 Tupaia belangeri ENSTBEG00000010202 I 0.766
SP1 Taeniopygia guttata ENSTGUG00000015642 I 0.766
sp1 Tetraodon nigroviridis ENSTNIG00000007066 I 0.766
sp1 Takifugu rubripes ENSTRUG00000014305 I 0.766
ENSTSYG00000001068 Tarsius syrichta ENSTSYG00000001068 I 0.766
SP1 Tursiops truncatus ENSTTRG00000009591 I 0.766
ENSXMAG00000017829 Xiphophorus maculatus ENSXMAG00000017829 I 0.766
EVEC_0000041101 Enterobius vermicularis EVEC_0000041101 I 0.804
Gfo_R005030 Geospiza fortis Gfo_R005030 I 0.766
GPLIN_000570600 Globodera pallida GPLIN_000570600 I 0.784
GPUH_0001030801 Gongylonema pulchrum GPUH_0001030801 I 0.820
HCOI00688600 Haemonchus contortus HCOI00688600 I 0.820
HPBE_0001438901 Heligmosomoides bakeri HPBE_0001438901 I 0.820
HPLM_0000529101 Haemonchus placei HPLM_0000529101 I 0.820
L596_g19604 Steinernema carpocapsae L596_g19604 I 0.764
L889_g32073 Steinernema feltiae L889_g32073 I 0.764
L892_g17070 Steinernema scapterisci L892_g17070 I 0.764
L893_g2044 Steinernema glaseri L893_g2044 I 0.764
L898_g7955 Steinernema monticolum L898_g7955 I 0.764
LCUP000151 Lucilia cuprina LCUP000151 I 0.757
LDEC008345 Leptinotarsa decemlineata LDEC008345 I 0.770
LLOJ008095 Lutzomyia longipalpis LLOJ008095 I 0.761
LOAG_01580 Loa loa LOAG_01580 I 0.824
MhA1_Contig599.frz3.gene7 Meloidogyne hapla MhA1_Contig599.frz3.gene7 I 0.795
Myotis_brandtii_SP1_10022992 Myotis brandtii Myotis_brandtii_SP1_10022992 I 0.766
nAv.1.0.1.g06936 Acanthocheilonema viteae nAv.1.0.1.g06936 I 0.824
NBR_0001206901 Nippostrongylus brasiliensis NBR_0001206901 I 0.820
nDi.2.2.2.g02202 Dirofilaria immitis nDi.2.2.2.g02202 I 0.824
NECAME_13378 Necator americanus NECAME_13378 I 0.820
nLs.2.1.2.g07946 Litomosoides sigmodontis nLs.2.1.2.g07946 I 0.824
nOo.2.0.1.g04030 Onchocerca ochengi nOo.2.0.1.g04030 I 0.790
nOo.2.0.1.g09582 Onchocerca ochengi nOo.2.0.1.g09582 I 0.824
Ogr16979 Ophisaurus gracilis Ogr16979 I 0.766
Pvit_07435 Pogona vitticeps Pvit_07435 I 0.766
RSKR_0000732300 Rhabditophanes kr3021 RSKR_0000732300 I 0.766
SBAD_0000755901 Soboliphyme baturini SBAD_0000755901 I 0.773
SMAR004952 Strigamia maritima SMAR004952 I 0.757
SMUV_0000007001 Syphacia muris SMUV_0000007001 I 0.804
SPU_009831 Strongylocentrotus purpuratus SPU_009831 I 0.760
SPU_009832 Strongylocentrotus purpuratus SPU_009832 I 0.760
WBGene00237583 Onchocerca volvulus WBGene00237583 I 0.824
WBGene00237584 Onchocerca volvulus WBGene00237584 I 0.790