CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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XP_001540939.1
(
Histoplasma capsulatum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
XP_001540939.1
T131790_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
XP_001540939.1
M01188_2.00
Histoplasma capsulatum
NBAGCCKCNN
NNGMGGCTVN
PBM
Lambert et al.(2019)
pTH11147
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU06487
M01197_2.00
Neurospora crassa
NBMGCCKCNN
NNGMGGCKVN
PBM
Lambert et al.(2019)
pTH10205
0.789
0.841
NCU06487
M01887_2.00
Neurospora crassa
NBAGCCKCRH
DYGMGGCTVN
PBM
Weirauch et al.(2014)
pTH8951
0.789
0.841
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01188_2.00
C2H2 ZF
30
55
FKCNYPDCKAEPFQTQYLLNSHANVH
M01188_2.00
C2H2 ZF
61
90
YYCPVKGCPRGEGGKGFKRKNEMKRHGLVH
M01188_2.00
C2H2 ZF
95
121
YVCPFCPDQQHTYPRPDNLQRHVRVHH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_001540939.1
C2H2 ZF
304
329
FKCNYPDCKAEPFQTQYLLNSHANVH
XP_001540939.1
C2H2 ZF
335
364
YYCPVKGCPRGEGGKGFKRKNEMKRHGLVH
XP_001540939.1
C2H2 ZF
369
395
YVCPFCPDQQHTYPRPDNLQRHVRVHH
Links
Other
C2H2 ZF
family TFs
Other
Histoplasma capsulatum
TFs
91 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy