SWI5 (Saccharomyces cerevisiae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 YDR146C T131829_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SWI5
M00020_2.00		 Saccharomyces cerevisiae
NNKGCTGGTHN
NDACCAGCMNN		 PBM
Badis et al.(2008)
SWI5_2037		 (Direct) (Direct)
SWI5
M07450_2.00		 Saccharomyces cerevisiae
KGCTGGKH
DMCCAGCM		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0402.1		 (Direct) (Direct)
SWI5
M08516_2.00		 Saccharomyces cerevisiae
KGCTGGKH
DMCCAGCM		 Misc
DeBoer et al.(2011)
YDR146C_569		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ACE2
M00033_2.00 		Saccharomyces cerevisiae
NTGCTGGBYN
NRVCCAGCAN		 PBM
Badis et al.(2008)
ACE2_2082 		0.797 0.889
ACE2
M07463_2.00 		Saccharomyces cerevisiae
NGCTGGB
VCCAGCN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0267.1 		0.797 0.889
ACE2
M08534_2.00 		Saccharomyces cerevisiae
NGCTGGBH
DVCCAGCN		 Misc
DeBoer et al.(2011)
YLR131C_1332 		0.797 0.889
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00020_2.00 C2H2 ZF 51 75
M00020_2.00 C2H2 ZF 81 105
M00020_2.00 C2H2 ZF 114 130

DNA Binding Domains

Protein ID Domain From To Sequence
YDR146C C2H2 ZF 550 574
YDR146C C2H2 ZF 580 604
YDR146C C2H2 ZF 613 629

Links

Other C2H2 ZF family TFs
Other Saccharomyces cerevisiae TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
4284_YDR146C Saccharomyces paradoxus 4284_YDR146C I 0.827
4131_Multiple Saccharomyces bayanus 4131_Multiple I 0.827
3580_YDR146C Saccharomyces mikatae 3580_YDR146C I 0.823
ACE2 Saccharomyces cerevisiae YLR131C D 0.797
14324_YLR131C Saccharomyces paradoxus 14324_YLR131C I 0.797
KNAG_0A05170 Kazachstania naganishii KNAG_0A05170 I 0.781
SU7_2211 Saccharomyces arboricola SU7_2211 I 0.781
TDEL_0F04510 Torulaspora delbrueckii TDEL_0F04510 I 0.778
Kpol_1036p70 Vanderwaltozyma polyspora Kpol_1036p70 I 0.778
16206_YLR131C Saccharomyces bayanus 16206_YLR131C I 0.777
KAFR_0B05740 Kazachstania africana KAFR_0B05740 I 0.774
CAGL0E01331g Candida glabrata CAGL0E01331g I 0.774
NDAI_0J00990 Naumovozyma dairenensis NDAI_0J00990 I 0.774
Scas_Contig693.31 Saccharomyces castellii Scas_Contig693.31 I 0.770
NCAS_0B03600 Naumovozyma castellii NCAS_0B03600 I 0.770
Kwal_23925 Kluyveromyces waltii Kwal_23925 I 0.761
KLTH0G12254g Kluyveromyces thermotolerans KLTH0G12254g I 0.757
KLTH0G12254g Lachancea thermotolerans KLTH0G12254g I 0.757