CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MIG3
(
Saccharomyces cerevisiae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
YER028C
T131833_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage; regulation of transcription from RNA polymerase II promoter by glucose; and response to ethanol. Colocalizes with chromatin. [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MIG3
M00023_2.00
Saccharomyces cerevisiae
NNCCCCGCAH
DTGCGGGGNN
PBM
Badis et al.(2008)
MIG3_2054
(Direct)
(Direct)
MIG3
M01529_2.00
Saccharomyces cerevisiae
CYCCRBNNN
NNNVYGGRG
PBM
Zhu et al.(2009)
Mig3
(Direct)
(Direct)
MIG3
M07453_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0339.1
(Direct)
(Direct)
MIG3
M08520_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
Misc
DeBoer et al.(2011)
YER028C_501
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MIG2
M00027_2.00
Saccharomyces cerevisiae
NNCCCCRBNN
NNVYGGGGNN
PBM
Badis et al.(2008)
MIG2_2053
0.787
0.826
MIG2
M01533_2.00
Saccharomyces cerevisiae
NNCCCCRCNN
NNGYGGGGNN
PBM
Zhu et al.(2009)
Mig2
0.787
0.826
MIG2
M07457_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0338.1
0.787
0.826
MIG2
M08525_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
Misc
DeBoer et al.(2011)
YGL209W_523
0.787
0.826
MIG2
M10394_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MIG2_02
0.787
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00023_2.00
C2H2 ZF
16
38
FRCEICSRGFHRLEHKKRHGRTH
M00023_2.00
C2H2 ZF
44
68
HKCTVQGCPKSFSRSDELKRHLRTH
M01529_2.00
C2H2 ZF
17
39
FRCEICSRGFHRLEHKKRHGRTH
M01529_2.00
C2H2 ZF
45
69
HKCTVQGCPKSFSRSDELKRHLRTH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YER028C
C2H2 ZF
17
39
FRCEICSRGFHRLEHKKRHGRTH
YER028C
C2H2 ZF
45
69
HKCTVQGCPKSFSRSDELKRHLRTH
Links
Other
C2H2 ZF
family TFs
Other
Saccharomyces cerevisiae
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy