RIM101 (Saccharomyces cerevisiae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 YHL027W T131841_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables DNA-binding transcription repressor activity, RNA polymerase II-specific. Involved in several processes, including cellular response to alkaline pH; cellular response to anoxia; and regulation of transcription by RNA polymerase II. Located in nucleus. Human ortholog(s) of this gene implicated in neonatal diabetes mellitus with congenital hypothyroidism. Orthologous to human GLIS3 (GLIS family zinc finger 3). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RIM101
M00030_2.00		 Saccharomyces cerevisiae
BCTTGGCRHN
NDYGCCAAGV		 PBM
Badis et al.(2008)
RIM101_2030		 (Direct) (Direct)
RIM101
M07460_2.00		 Saccharomyces cerevisiae
CTTGGCR
YGCCAAG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0368.1		 (Direct) (Direct)
RIM101
M08529_2.00		 Saccharomyces cerevisiae
TGCCAAG
CTTGGCA		 Misc
DeBoer et al.(2011)
YHL027W_600		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00030_2.00 C2H2 ZF 51 76
M00030_2.00 C2H2 ZF 87 111
M00030_2.00 C2H2 ZF 117 139

DNA Binding Domains

Protein ID Domain From To Sequence
YHL027W C2H2 ZF 146 171
YHL027W C2H2 ZF 182 206
YHL027W C2H2 ZF 212 234

Links

Other C2H2 ZF family TFs
Other Saccharomyces cerevisiae TFs

Invalid Input OrderBy

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action