RGM1 (Saccharomyces cerevisiae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 YMR182C T131852_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGM1
M00037_2.00		 Saccharomyces cerevisiae
NCCCCTGR
YCAGGGGN		 PBM
Badis et al.(2008)
RGM1_2105		 (Direct) (Direct)
RGM1
M07467_2.00		 Saccharomyces cerevisiae
CCCCT
AGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0366.1		 (Direct) (Direct)
RGM1
M08540_2.00		 Saccharomyces cerevisiae
CCCCT
AGGGG		 Misc
DeBoer et al.(2011)
YMR182C_531		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00037_2.00 C2H2 ZF 18 43
M00037_2.00 C2H2 ZF 49 72

DNA Binding Domains

Protein ID Domain From To Sequence
YMR182C C2H2 ZF 19 44
YMR182C C2H2 ZF 50 73

Links

Other C2H2 ZF family TFs
Other Saccharomyces cerevisiae TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
18960_YMR182C Saccharomyces bayanus 18960_YMR182C I 0.797
17088_YMR182C Saccharomyces mikatae 17088_YMR182C I 0.797
16604_YMR182C Saccharomyces paradoxus 16604_YMR182C I 0.797