USV1 (Saccharomyces cerevisiae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 YPL230W T131856_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
USV1
M00041_2.00		 Saccharomyces cerevisiae
NCCCCTGD
HCAGGGGN		 PBM
Badis et al.(2008)
YPL230W_2051		 (Direct) (Direct)
USV1
M01538_2.00		 Saccharomyces cerevisiae
NYCCCTKD
HMAGGGRN		 PBM
Zhu et al.(2009)
Usv1		 (Direct) (Direct)
USV1
M08544_2.00		 Saccharomyces cerevisiae
CCCCT
AGGGG		 Misc
DeBoer et al.(2011)
YPL230W_509		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KTB10507.1
M01040_2.00 		Candida glabrata
NBCCCTKR
YMAGGGVN		 PBM
Siggers et al.(2014)
CAGL0L00583gCgla 		0.765 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00041_2.00 C2H2 ZF 40 65
M00041_2.00 C2H2 ZF 71 94
M01538_2.00 C2H2 ZF 41 66
M01538_2.00 C2H2 ZF 72 95

DNA Binding Domains

Protein ID Domain From To Sequence
YPL230W C2H2 ZF 41 66
YPL230W C2H2 ZF 72 95

Links

Other C2H2 ZF family TFs
Other Saccharomyces cerevisiae TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SKUD_109001 Saccharomyces kudriavzevii SKUD_109001 I 0.827
21409_YPL230W Saccharomyces mikatae 21409_YPL230W I 0.827
21995_YPL230W Saccharomyces paradoxus 21995_YPL230W I 0.827
24535_YPL230W Saccharomyces bayanus 24535_YPL230W I 0.827
NCAS_0G01270 Naumovozyma castellii NCAS_0G01270 I 0.810
KNAG_0F01710 Kazachstania naganishii KNAG_0F01710 I 0.805
SAKL0A03476g Lachancea kluyveri SAKL0A03476g I 0.785
AGOS_AFL136W Ashbya gossypii AGOS_AFL136W I 0.779
AACERI_AaceriAFL136W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFL136W I 0.779
Ecym_2159 Eremothecium cymbalariae Ecym_2159 I 0.779
KNAG_0D00900 Kazachstania naganishii KNAG_0D00900 I 0.771
KAFR_0A07120 Kazachstania africana KAFR_0A07120 I 0.771
KTB10507.1 Candida glabrata KTB10507.1 D 0.765