CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Afo_R004479
(
Aptenodytes forsteri
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Afo_R004479
T132788_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zfp410
M00140_2.00
Mus musculus
CYATCCCA
TGGGATRG
PBM
Badis et al.(2009)
Zfp410_3034
0.804
0.957
ZNF410
M02882_2.00
Homo sapiens
KVNTATTATGGGATGKN
NMCATCCCATAATANBM
SELEX
Jolma et al.(2013)
ZNF410_1
0.804
0.957
ZNF410
M04435_2.00
Homo sapiens
NTATTATGGGNTRB
VYANCCCATAATAN
SELEX
Yin et al.(2017)
ZNF410_eDBD_HT-SELEX
0.804
0.957
ZNF410
M04436_2.00
Homo sapiens
NTATTATGGGHTRB
VYADCCCATAATAN
SELEX
Yin et al.(2017)
ZNF410_eDBD_Methyl-HT-SELEX
0.804
0.957
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Afo_R004479
C2H2 ZF
217
241
LKCTVEGCDRTFVWPAHFKYHLKTH
Afo_R004479
C2H2 ZF
247
271
FTCPAEGCGKSFYVLQRLKVHMRTH
Afo_R004479
C2H2 ZF
277
301
FVCTELGCGKQFTTAGNLKNHLRIH
Afo_R004479
C2H2 ZF
307
331
FLCEAQGCGRSFAEYSSLRKHLVVH
Afo_R004479
C2H2 ZF
337
360
HQCQICGKTFSQSGSRNVHMRKHH
Links
Other
C2H2 ZF
family TFs
Other
Aptenodytes forsteri
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy