Afo_R007523 (Aptenodytes forsteri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Afo_R007523 T132828_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF276
M04495_2.00
Homo sapiens
NWAAGGWSGWVDMKACNHCCTTWAN

NTWAAGGDNGTMKHBWCSWCCTTWN
SELEX
Yin et al.(2017)
ZNF276_eDBD_HT-SELEX
0.816 0.974
ZNF276
M04496_2.00
Homo sapiens
STTAAGGBSGWVWATACYHCCTTAMN

NKTAAGGDRGTATWBWCSVCCTTAAS
SELEX
Yin et al.(2017)
ZNF276_eDBD_Methyl-HT-SELEX
0.816 0.974
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R007523 C2H2 ZF 357 382
Afo_R007523 C2H2 ZF 389 413
Afo_R007523 C2H2 ZF 419 441
Afo_R007523 C2H2 ZF 447 469
Afo_R007523 C2H2 ZF 477 500

Links

Other C2H2 ZF family TFs
Other Aptenodytes forsteri TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.000
Bo2g104810 Brassica oleracea Bo2g104810 I 0.000
Bra018490 Brassica rapa Bra018490 I 0.000
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.000
Ca_06495 Cicer arietinum Ca_06495 I 0.000
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.000
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.000
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.000
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.000
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.000
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.000
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N 0.000
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.000
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.000
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.000
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.000
mgf026186m Mimulus guttatus mgf026186m I 0.000
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.000
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.000
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.000
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.000
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.000
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.000