Alligator_sinensis_CCG001391.4 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG001391.4 T132974_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Maz
M08988_2.00 		Mus musculus
YYBYYYYYYCNSYYCCWCCYYN
NRRGGWGGRRSNGRRRRRRVRR		 Misc
Kulakovskiy et al.(2013)
MAZ_MOUSE.H11MO.0.A 		0.782 0.964
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001391.4 C2H2 ZF 1 19
Alligator_sinensis_CCG001391.4 C2H2 ZF 25 47
Alligator_sinensis_CCG001391.4 C2H2 ZF 55 78
Alligator_sinensis_CCG001391.4 C2H2 ZF 84 106
Alligator_sinensis_CCG001391.4 C2H2 ZF 110 131

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MAZ Anolis carolinensis ENSACAG00000014698 I 0.814
Pvit_12096 Pogona vitticeps Pvit_12096 I 0.814
ENSSHAG00000009478 Sarcophilus harrisii ENSSHAG00000009478 I 0.794
Myotis_brandtii_MAZ_10014461 Myotis brandtii Myotis_brandtii_MAZ_10014461 I 0.782
MAZ Pan troglodytes ENSPTRG00000007968 I 0.782
Maz Rattus norvegicus ENSRNOG00000055082 I 0.782
ENSSTOG00000027842 Ictidomys tridecemlineatus ENSSTOG00000027842 I 0.782
MAZ Sus scrofa ENSSSCG00000025321 I 0.782
MAZ Otolemur garnettii ENSOGAG00000033940 I 0.782
ENSNLEG00000007559 Nomascus leucogenys ENSNLEG00000007559 I 0.782
ENSECAG00000024341 Equus caballus ENSECAG00000024341 I 0.782
MAZ Cavia porcellus ENSCPOG00000019886 I 0.782
ENSAMEG00000014864 Ailuropoda melanoleuca ENSAMEG00000014864 I 0.782
MAZ Homo sapiens ENSG00000103495 D 0.782
ENSBTAP00000026016-D1 Bos grunniens ENSBTAP00000026016-D1 I 0.782
Maz Mus musculus ENSMUSG00000030678 D 0.782
ENSGMOG00000001761 Gadus morhua ENSGMOG00000001761 I 0.775
ENSTRUG00000004091 Takifugu rubripes ENSTRUG00000004091 N 0.773
ENSORLG00000000210 Oryzias latipes ENSORLG00000000210 N 0.773
ENSGACG00000014840 Gasterosteus aculeatus ENSGACG00000014840 I 0.765
ENSONIG00000011463 Oreochromis niloticus ENSONIG00000011463 N 0.757
ENSGMOG00000016794 Gadus morhua ENSGMOG00000016794 N 0.757
ENSORLG00000006188 Oryzias latipes ENSORLG00000006188 N 0.757
ENSXMAG00000018598 Xiphophorus maculatus ENSXMAG00000018598 N 0.757