Alligator_sinensis_CCG001426.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG001426.1 T132976_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Mtf1
M00136_2.00 		Mus musculus
CGTGYGCAM
KTGCRCACG		 PBM
Badis et al.(2009)
Mtf1_2377 		0.825 0.986
MTF1
M02922_2.00 		Homo sapiens
GTGCCGTGTGCAAA
TTTGCACACGGCAC		 SELEX
Jolma et al.(2013)
MTF1_1 		0.825 0.986
MTF1
M04617_2.00 		Homo sapiens
NDNDYCGTGTGCAAARN
NYTTTGCACACGRHNHN		 SELEX
Yin et al.(2017)
MTF1_eDBD_HT-SELEX 		0.825 0.986
MTF1
M08942_2.00 		Homo sapiens
MGKVHCGTGYGCADMDB
VHKHTGCRCACGDBMCK		 Misc
Kulakovskiy et al.(2013)
MTF1_HUMAN.H11MO.0.C 		0.825 0.986
Mtf1
M08981_2.00 		Mus musculus
MGKVHCGTGYGCADMDB
VHKHTGCRCACGDBMCK		 Misc
Kulakovskiy et al.(2013)
MTF1_MOUSE.H11MO.0.C 		0.825 0.986
MTF1
M10308_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MTF1_01 		0.825 0.986
MTF1
M10309_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MTF1_02 		0.825 0.986
MTF1
M10310_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MTF1_Q4 		0.825 0.986
MTF1
M10311_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MTF1_Q5 		0.825 0.986
MTF1
M04618_2.00 		Homo sapiens
NRNRCCGTGTGCAAARV
BYTTTGCACACGGYNYN		 SELEX
Yin et al.(2017)
MTF1_eDBD_Methyl-HT-SELEX 		0.825 0.986
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001426.1 C2H2 ZF 142 166
Alligator_sinensis_CCG001426.1 C2H2 ZF 172 196
Alligator_sinensis_CCG001426.1 C2H2 ZF 202 226
Alligator_sinensis_CCG001426.1 C2H2 ZF 231 255
Alligator_sinensis_CCG001426.1 C2H2 ZF 261 285
Alligator_sinensis_CCG001426.1 C2H2 ZF 291 315

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTF1 Microcebus murinus ENSMICG00000011969 I 0.825
MTF1 Myotis lucifugus ENSMLUG00000000963 I 0.825
MTF1 Macaca mulatta ENSMMUG00000023275 I 0.825
Mtf1 Rattus norvegicus ENSRNOG00000025724 I 0.825
LOC100909856 Rattus norvegicus ENSRNOG00000050240 I 0.825
MTF1 Gorilla gorilla ENSGGOG00000007624 I 0.825
ENSSTOG00000025276 Ictidomys tridecemlineatus ENSSTOG00000025276 I 0.825
MTF1 Pteropus vampyrus ENSPVAG00000010152 I 0.825
ENSMPUG00000014538 Mustela putorius furo ENSMPUG00000014538 I 0.825
MTF1 Oryctolagus cuniculus ENSOCUG00000005389 I 0.825
ENSPPYG00000001521 Pongo abelii ENSPPYG00000001521 I 0.825
ENSOARG00000019896 Ovis aries ENSOARG00000019896 I 0.825
MTF1 Pan troglodytes ENSPTRG00000022932 I 0.825
Mtf1 Mus musculus ENSMUSG00000028890 D 0.825
ENSNLEG00000011682 Nomascus leucogenys ENSNLEG00000011682 I 0.825
ENSTSYG00000005589 Tarsius syrichta ENSTSYG00000005589 I 0.825
MTF1 Tursiops truncatus ENSTTRG00000013535 I 0.825
MTF1 Canis familiaris ENSCAFG00000003247 I 0.825
MTF1 Callithrix jacchus ENSCJAG00000002097 I 0.825
MTF1 Bos taurus ENSBTAG00000006511 I 0.825
ENSP00000362127 Macaca fascicularis ENSP00000362127 I 0.825
ENSAMEG00000001186 Ailuropoda melanoleuca ENSAMEG00000001186 I 0.825
Myotis_brandtii_MTF1_10028927 Myotis brandtii Myotis_brandtii_MTF1_10028927 I 0.825
MTF1 Cavia porcellus ENSCPOG00000014657 I 0.825
ENSCSAG00000001118 Chlorocebus sabaeus ENSCSAG00000001118 I 0.825
MTF1 Felis catus ENSFCAG00000011020 I 0.825
MTF1 Homo sapiens ENSG00000188786 D 0.825
ENSBTAP00000008535-D1 Bos grunniens ENSBTAP00000008535-D1 I 0.825
MTF1 Echinops telfairi ENSETEG00000003045 I 0.825
MTF1 Dasypus novemcinctus ENSDNOG00000009118 I 0.825
MTF1 Equus caballus ENSECAG00000017235 I 0.825
ENSPANG00000016211 Papio anubis ENSPANG00000016211 I 0.825
MTF1 Otolemur garnettii ENSOGAG00000000872 I 0.823
ENSPSIG00000005687 Pelodiscus sinensis ENSPSIG00000005687 I 0.821
MTF1 Monodelphis domestica ENSMODG00000017745 I 0.819
ENSSHAG00000014007 Sarcophilus harrisii ENSSHAG00000014007 I 0.819
Pvit_17763 Pogona vitticeps Pvit_17763 I 0.819
Cmyd_10015325 Chelonia mydas Cmyd_10015325 I 0.819
Ogr09934 Ophisaurus gracilis Ogr09934 I 0.819
MTF1 Anolis carolinensis ENSACAG00000017181 I 0.819
ENSLOCG00000003310 Lepisosteus oculatus ENSLOCG00000003310 I 0.817
MTF1 Ornithorhynchus anatinus ENSOANG00000002047 I 0.816
ENSAMXG00000001644 Astyanax mexicanus ENSAMXG00000001644 I 0.813
ENSXMAG00000014614 Xiphophorus maculatus ENSXMAG00000014614 I 0.808
ENSPFOG00000013962 Poecilia formosa ENSPFOG00000013962 I 0.808
MTF1 Taeniopygia guttata ENSTGUG00000001500 I 0.807
ENSFALG00000000973 Ficedula albicollis ENSFALG00000000973 I 0.807
ENSAPLG00000016056 Anas platyrhynchos ENSAPLG00000016056 I 0.807
MTF1 Meleagris gallopavo ENSMGAG00000003052 I 0.807
Gfo_R001683 Geospiza fortis Gfo_R001683 I 0.807
Brh_R010359 Buceros rhinoceros Brh_R010359 I 0.807
Aan_R005906 Calypte anna Aan_R005906 I 0.807
Tal_R009432 Tyto alba Tal_R009432 I 0.807
MTF1 Gallus gallus ENSGALG00000001639 I 0.807
MTF1 Oryzias latipes ENSORLG00000014411 I 0.807
Afo_R013895 Aptenodytes forsteri Afo_R013895 I 0.807
ENSONIG00000016218 Oreochromis niloticus ENSONIG00000016218 I 0.805
MTF1 Gasterosteus aculeatus ENSGACG00000013875 I 0.805
ENSGMOG00000015592 Gadus morhua ENSGMOG00000015592 I 0.804
mtf1 Xenopus tropicalis XB-GENE-979128 I 0.790
mtf1.L Xenopus laevis XB-GENE-979131 I 0.790
tetur01g09970 Tetranychus urticae tetur01g09970 I 0.780
Sakowv30031703m.g Saccoglossus kowalevskii Sakowv30031703m.g I 0.770
MTF1 Takifugu rubripes ENSTRUG00000005297 I 0.759