CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG001426.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG001426.1
T132976_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Mtf1
M00136_2.00
Mus musculus
CGTGYGCAM
KTGCRCACG
PBM
Badis et al.(2009)
Mtf1_2377
0.825
0.986
MTF1
M02922_2.00
Homo sapiens
GTGCCGTGTGCAAA
TTTGCACACGGCAC
SELEX
Jolma et al.(2013)
MTF1_1
0.825
0.986
MTF1
M04617_2.00
Homo sapiens
NDNDYCGTGTGCAAARN
NYTTTGCACACGRHNHN
SELEX
Yin et al.(2017)
MTF1_eDBD_HT-SELEX
0.825
0.986
MTF1
M08942_2.00
Homo sapiens
MGKVHCGTGYGCADMDB
VHKHTGCRCACGDBMCK
Misc
Kulakovskiy et al.(2013)
MTF1_HUMAN.H11MO.0.C
0.825
0.986
Mtf1
M08981_2.00
Mus musculus
MGKVHCGTGYGCADMDB
VHKHTGCRCACGDBMCK
Misc
Kulakovskiy et al.(2013)
MTF1_MOUSE.H11MO.0.C
0.825
0.986
MTF1
M10308_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MTF1_01
0.825
0.986
MTF1
M10309_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MTF1_02
0.825
0.986
MTF1
M10310_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MTF1_Q4
0.825
0.986
MTF1
M10311_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MTF1_Q5
0.825
0.986
MTF1
M04618_2.00
Homo sapiens
NRNRCCGTGTGCAAARV
BYTTTGCACACGGYNYN
SELEX
Yin et al.(2017)
MTF1_eDBD_Methyl-HT-SELEX
0.825
0.986
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG001426.1
C2H2 ZF
142
166
YQCTFEGCPRTYSTAGNLRTHQKTH
Alligator_sinensis_CCG001426.1
C2H2 ZF
172
196
FVCNQEGCGKAFLTSYSLRIHVRVH
Alligator_sinensis_CCG001426.1
C2H2 ZF
202
226
FECDVQGCEKAFNTLYRLKAHQRLH
Alligator_sinensis_CCG001426.1
C2H2 ZF
231
255
FNCDTQGCSKYFTTLSDLRKHVRTH
Alligator_sinensis_CCG001426.1
C2H2 ZF
261
285
FRCDHDGCGKAFAASHHLKTHVRTH
Alligator_sinensis_CCG001426.1
C2H2 ZF
291
315
FFCPTDGCEKTFSTQYSLKSHMKGH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy