Alligator_sinensis_CCG003566.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG003566.1 T133029_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
OVOL1
M04556_2.00
Homo sapiens
NDDACCGTTAYNYN

NRNRTAACGGTHHN
SELEX
Yin et al.(2017)
OVOL1_FL_HT-SELEX
0.774 0.838
OVOL1
M08919_2.00
Homo sapiens
WCMGTTACM

KGTAACKGW
Misc
Kulakovskiy et al.(2013)
OVOL1_HUMAN.H11MO.0.C
0.774 0.838
OVOL1
M04557_2.00
Homo sapiens
NDDACCGTTAYNYN

NRNRTAACGGTHHN
SELEX
Yin et al.(2017)
OVOL1_FL_Methyl-HT-SELEX
0.774 0.838
Ovol1
M08974_2.00
Mus musculus
WCMGTTACM

KGTAACKGW
Misc
Kulakovskiy et al.(2013)
OVOL1_MOUSE.H11MO.0.C
0.771 0.853
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG003566.1 C2H2 ZF 101 122
Alligator_sinensis_CCG003566.1 C2H2 ZF 128 150
Alligator_sinensis_CCG003566.1 C2H2 ZF 156 179

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

Invalid Input OrderBy

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action