Alligator_sinensis_CCG004454.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG004454.1 T133076_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Glis2
M00129_2.00
Mus musculus
NKACCCCYYNN

NNRRGGGGTMN
PBM
Badis et al.(2009)
Glis2_1757
0.811 0.986
GLIS2
M02887_2.00
Homo sapiens
KACCCCCCRCRDHG

CDHYGYGGGGGGTM
SELEX
Jolma et al.(2013)
GLIS2_1
0.811 0.971
GLIS2
M04449_2.00
Homo sapiens
RCCCCCCRCRWHGH

DCDWYGYGGGGGGY
SELEX
Yin et al.(2017)
GLIS2_eDBD_HT-SELEX
0.811 0.971
GLIS2
M04450_2.00
Homo sapiens
DCWHYGYDGGGGGT

ACCCCCHRCRDWGH
SELEX
Yin et al.(2017)
GLIS2_eDBD_Methyl-HT-SELEX
0.811 0.971
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG004454.1 C2H2 ZF 238 260
Alligator_sinensis_CCG004454.1 C2H2 ZF 266 290
Alligator_sinensis_CCG004454.1 C2H2 ZF 296 320

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

Invalid Input OrderBy

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action