CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Alligator_sinensis_CCG004791.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG004791.1
T133102_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM6
M08277_2.00
Homo sapiens
TTTTYYWBHHTTTYYHYTBYN
NRVARDRRAAADDVWRRAAAA
ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME
0.827
1.000
PRDM6
M08855_2.00
Homo sapiens
NNKTTTTCYYBYB
VRVRRGAAAAMNN
Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG004791.1
C2H2 ZF
141
162
WKCGQCFKTFTQRILLQMHVCT
Alligator_sinensis_CCG004791.1
C2H2 ZF
169
191
YQCGHCSQSFSQPSELRNHVVTH
Alligator_sinensis_CCG004791.1
C2H2 ZF
197
219
FKCGYCGRAFAGATTLNNHIRTH
Alligator_sinensis_CCG004791.1
C2H2 ZF
225
246
FKCERCERSFTQATQLSRHQRM
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy