CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG005558.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG005558.1
T133137_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF282
M02904_2.00
Homo sapiens
BTTTCCCMYAACACKNN
NNMGTGTTRKGGGAAAV
SELEX
Jolma et al.(2013)
ZNF282_1
0.762
0.809
ZNF282
M04541_2.00
Homo sapiens
NHTCCCMYNACMCK
MGKGTNRKGGGADN
SELEX
Yin et al.(2017)
ZNF282_eDBD_HT-SELEX
0.762
0.809
ZNF282
M05849_2.00
Homo sapiens
HMTCCCRCMCC
GGKGYGGGAKD
SMiLE-seq
Isakova et al.(2017)
ZNF282
0.762
0.809
ZNF282
M07626_2.00
Homo sapiens
CTCCCS
SGGGAG
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF282.RCADE.ReprocessedData
0.762
0.809
ZNF282
M04542_2.00
Homo sapiens
HWTCCCMYVACMCN
NGKGTBRKGGGAWD
SELEX
Yin et al.(2017)
ZNF282_eDBD_Methyl-HT-SELEX
0.762
0.809
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG005558.1
C2H2 ZF
475
497
HSCNECGKTFSVKKSLRIHQRSH
Alligator_sinensis_CCG005558.1
C2H2 ZF
503
525
YECTECGRSFNCHSGLVRHQMIH
Alligator_sinensis_CCG005558.1
C2H2 ZF
531
553
YQCGDCGKRYSRKEHLQNHQRLH
Alligator_sinensis_CCG005558.1
C2H2 ZF
559
581
FQCAACGKSFIRKQNLLKHQRIH
Alligator_sinensis_CCG005558.1
C2H2 ZF
587
609
YQCGDCGRSFRYKESLKDHRRVH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy