CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG005717.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG005717.1
T133144_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zic3
M00151_2.00
Mus musculus
NCMYVBNRNB
VNYNVBRKGN
PBM
Badis et al.(2009)
Zic3_3119
0.814
0.991
ZIC3
M02894_2.00
Homo sapiens
BACCCCCYGCKGYGH
DCRCMGCRGGGGGTV
SELEX
Jolma et al.(2013)
ZIC3_1
0.814
0.991
Zic3
M02936_2.00
Mus musculus
KRCCCCCYGCTGYGH
DCRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
Zic3_1
0.814
0.991
ZIC3
M04491_2.00
Homo sapiens
VGACCCCCYGCTGTGM
KCACAGCRGGGGGTCB
SELEX
Yin et al.(2017)
ZIC3_eDBD_HT-SELEX
0.814
0.991
ZIC3
M04493_2.00
Homo sapiens
BACCCCCYGCTGYGH
DCRCAGCRGGGGGTV
SELEX
Yin et al.(2017)
ZIC3_FL_HT-SELEX
0.814
0.991
ZIC3
M08902_2.00
Homo sapiens
NVVYHCCTGCTGDGN
NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_HUMAN.H11MO.0.B
0.814
0.991
Zic3
M09013_2.00
Mus musculus
NVVYHCCTGCTGDGN
NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_MOUSE.H11MO.0.A
0.814
0.991
ZIC3
M10229_2.00
Homo sapiens
VRBCMCCCN
NGGGKGVYB
Transfac
Matys et al.(2006)
V$ZIC3_01
0.814
0.991
Zic3
M10359_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC3_07
0.814
0.991
ZIC3
M04492_2.00
Homo sapiens
NKACCCCCTGCTGTGM
KCACAGCAGGGGGTMN
SELEX
Yin et al.(2017)
ZIC3_eDBD_Methyl-HT-SELEX
0.814
0.991
ZIC3
M04494_2.00
Homo sapiens
BRCCCCCTGCTGTGM
KCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC3_FL_Methyl-HT-SELEX
0.814
0.991
Zic1
M00137_2.00
Mus musculus
NCMYVBNGNK
MNCNVBRKGN
PBM
Badis et al.(2009)
Zic1_0991
0.805
0.927
ZIC1
M02893_2.00
Homo sapiens
KRCCCCCYGCTGYG
CRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC1_1
0.805
0.927
ZIC1
M04485_2.00
Homo sapiens
BVCCMCCYGYHGYGH
DCRCDRCRGGKGGBV
SELEX
Yin et al.(2017)
ZIC1_eDBD_HT-SELEX
0.805
0.927
ZIC1
M04487_2.00
Homo sapiens
BVCCCCCYGCTGYGH
DCRCAGCRGGGGGBV
SELEX
Yin et al.(2017)
ZIC1_FL_HT-SELEX
0.805
0.927
ZIC1
M08900_2.00
Homo sapiens
BMSCHCCCM
KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_HUMAN.H11MO.0.B
0.805
0.927
Zic1
M08990_2.00
Mus musculus
BMSCHCCCM
KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_MOUSE.H11MO.0.B
0.805
0.927
ZIC1
M10226_2.00
Homo sapiens
KRCNMMCYV
BRGKKNGTM
Transfac
Matys et al.(2006)
V$ZIC1_01
0.805
0.927
ZIC1
M10227_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC1_Q2
0.805
0.927
ZIC1
M04486_2.00
Homo sapiens
BACCCCCYRCTGTGM
KCACAGYRGGGGGTV
SELEX
Yin et al.(2017)
ZIC1_eDBD_Methyl-HT-SELEX
0.805
0.927
ZIC1
M04488_2.00
Homo sapiens
BRCCCCCTGCTGTGH
DCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC1_FL_Methyl-HT-SELEX
0.805
0.927
ZIC4
M02912_2.00
Homo sapiens
KRCCCCCYGYDGNGH
DCNCHRCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC4_1
0.791
0.873
ZIC4
M04566_2.00
Homo sapiens
BVCMHCMYRYNRYGH
DCRYNRYRKGDKGBV
SELEX
Yin et al.(2017)
ZIC4_eDBD_HT-SELEX
0.791
0.873
ZIC4
M04567_2.00
Homo sapiens
BRCCHCCYRYBGTKH
DMACVRYRGGDGGYV
SELEX
Yin et al.(2017)
ZIC4_eDBD_Methyl-HT-SELEX
0.791
0.873
Zic2
M00150_2.00
Mus musculus
NCMYVYNRNN
NNYNRBRKGN
PBM
Badis et al.(2009)
Zic2_2895
0.782
0.900
ZIC2
M08233_2.00
Homo sapiens
BBCCTGCWGNB
VNCWGCAGGVV
ChIP-seq
Najafabadi et al.(2015b)
ZIC2
0.782
0.900
Zic2
M09011_2.00
Mus musculus
NRMYHCCTGCTGDGH
DCHCAGCAGGDRKYN
Misc
Kulakovskiy et al.(2013)
ZIC2_MOUSE.H11MO.0.C
0.782
0.900
ZIC2
M10107_2.00
Homo sapiens
VACCMCCCH
DGGGKGGTB
Transfac
Matys et al.(2006)
V$ZIC2_01
0.782
0.900
Zic5
M00780_2.00
Mus musculus
BRCCCCCYDS
SHRGGGGGYV
PBM
Weirauch et al.(2013)
pTH2818
0.763
0.855
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG005717.1
C2H2 ZF
52
72
KSCDRTFSTMHELVTHVTMEH
Alligator_sinensis_CCG005717.1
C2H2 ZF
81
108
HICYWEECPRDGKSFKAKYKLVNHIRVH
Alligator_sinensis_CCG005717.1
C2H2 ZF
114
138
FPCPFPGCGKIFARSENLKIHKRTH
Alligator_sinensis_CCG005717.1
C2H2 ZF
144
168
FKCEFEGCDRRFANSSDRKKHMHVH
Alligator_sinensis_CCG005717.1
C2H2 ZF
174
194
YICKVCDKSYTHPSSLRKHMK
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
233 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy