CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG006333.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG006333.1
T133159_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zbtb14
M00145_2.00
Mus musculus
NNCGHGNNN
NNNCDCGNN
PBM
Badis et al.(2009)
Zfp161_2858
0.779
0.983
ZBTB14
M04629_2.00
Homo sapiens
DYGCGCGTGCACGHBN
NVDCGTGCACGCGCRH
SELEX
Yin et al.(2017)
ZBTB14_eDBD_HT-SELEX
0.779
0.983
ZBTB14
M04631_2.00
Homo sapiens
HCRCGTGCACGCGCAY
RTGCGCGTGCACGYGD
SELEX
Yin et al.(2017)
ZBTB14_FL_HT-SELEX
0.779
0.983
ZBTB14
M08387_2.00
Homo sapiens
SCGCGCSCS
SGSGCGCGS
ChIP-seq
Schmitges et al.(2016)
O43829_2-4.RCADE
0.779
0.983
ZBTB14
M08954_2.00
Homo sapiens
GCGCGCWCN
NGWGCGCGC
Misc
Kulakovskiy et al.(2013)
ZBT14_HUMAN.H11MO.0.C
0.779
0.983
ZBTB14
M10316_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZF5_01
0.779
0.983
ZBTB14
M10317_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZF5_B
0.779
0.983
ZBTB14
M04630_2.00
Homo sapiens
VYGCGCGYGCACGYNN
NNRCGTGCRCGCGCRB
SELEX
Yin et al.(2017)
ZBTB14_eDBD_Methyl-HT-SELEX
0.779
0.983
ZBTB14
M04632_2.00
Homo sapiens
TCACGTGCACGCGCAC
GTGCGCGTGCACGTGA
SELEX
Yin et al.(2017)
ZBTB14_FL_Methyl-HT-SELEX
0.779
0.983
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG006333.1
C2H2 ZF
269
291
IACQACGKTFSDEARLRKHEKLH
Alligator_sinensis_CCG006333.1
C2H2 ZF
297
319
FVCEMCTKGFTTQAHLKEHLKIH
Alligator_sinensis_CCG006333.1
C2H2 ZF
325
347
YSCEVCGKSFIRAPDLKKHERVH
Alligator_sinensis_CCG006333.1
C2H2 ZF
353
375
FACHMCDKAFKHKSHLKDHERRH
Alligator_sinensis_CCG006333.1
C2H2 ZF
381
404
FVCSSCTKAFAKASDLKRHENNMH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy