Alligator_sinensis_CCG006627.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG006627.1 T133177_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sall1
M10342_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SALL1_04 		0.827 1.000
Sall1
M10343_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SALL1_05 		0.827 1.000
Sall1
M10344_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SALL1_06 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG006627.1 C2H2 ZF 283 305
Alligator_sinensis_CCG006627.1 C2H2 ZF 311 333
Alligator_sinensis_CCG006627.1 C2H2 ZF 566 588
Alligator_sinensis_CCG006627.1 C2H2 ZF 598 620
Alligator_sinensis_CCG006627.1 C2H2 ZF 833 855
Alligator_sinensis_CCG006627.1 C2H2 ZF 861 883
Alligator_sinensis_CCG006627.1 C2H2 ZF 966 988
Alligator_sinensis_CCG006627.1 C2H2 ZF 994 1016

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SALL1 Sorex araneus ENSSARG00000000661 I 0.827
SALL1 Sus scrofa ENSSSCG00000002836 I 0.827
ENSSTOG00000020885 Ictidomys tridecemlineatus ENSSTOG00000020885 I 0.827
SALL1 Pan troglodytes ENSPTRG00000008108 I 0.827
ENSPSIG00000008582 Pelodiscus sinensis ENSPSIG00000008582 I 0.827
ENSMPUG00000003265 Mustela putorius furo ENSMPUG00000003265 I 0.827
Sall1 Mus musculus ENSMUSG00000031665 D 0.827
SALL1 Oryctolagus cuniculus ENSOCUG00000004364 I 0.827
SALL1 Taeniopygia guttata ENSTGUG00000007514 I 0.827
Aan_R003881 Calypte anna Aan_R003881 I 0.827
Gfo_R010713 Geospiza fortis Gfo_R010713 I 0.827
Pvit_15502 Pogona vitticeps Pvit_15502 I 0.827
Tal_R006196 Tyto alba Tal_R006196 I 0.827
ENSP00000251020 Macaca fascicularis ENSP00000251020 I 0.827
Cmyd_10020158 Chelonia mydas Cmyd_10020158 I 0.827
Afo_R009175 Aptenodytes forsteri Afo_R009175 I 0.827
Brh_R007445 Buceros rhinoceros Brh_R007445 I 0.827
SALL1 Gorilla gorilla ENSGGOG00000000663 I 0.827
SALL1 Meleagris gallopavo ENSMGAG00000004704 I 0.827
ENSDORG00000004249 Dipodomys ordii ENSDORG00000004249 I 0.827
ENSGALG00000003739 Gallus gallus ENSGALG00000003739 I 0.827
SALL1 Erinaceus europaeus ENSEEUG00000002014 I 0.827
SALL1 Callithrix jacchus ENSCJAG00000001740 I 0.827
SALL1 Canis familiaris ENSCAFG00000009755 I 0.827
ENSAMEG00000006817 Ailuropoda melanoleuca ENSAMEG00000006817 I 0.827
ENSAPLG00000003356 Anas platyrhynchos ENSAPLG00000003356 I 0.827
SALL1 Bos taurus ENSBTAG00000008544 I 0.827
SALL1 Echinops telfairi ENSETEG00000015150 I 0.827
SALL1 Equus caballus ENSECAG00000011334 I 0.827
SALL1 Homo sapiens ENSG00000103449 I 0.827
ENSFALG00000000074 Ficedula albicollis ENSFALG00000000074 I 0.827
ENSMEUG00000012206 Macropus eugenii ENSMEUG00000012206 I 0.826
SALL1 Loxodonta africana ENSLAFG00000015251 I 0.826
ENSBTAP00000011264-D1 Bos grunniens ENSBTAP00000011264-D1 I 0.826
SALL1 Dasypus novemcinctus ENSDNOG00000016413 I 0.826
SALL1 Myotis lucifugus ENSMLUG00000015541 I 0.826
SALL1 Monodelphis domestica ENSMODG00000013114 I 0.826
ENSSHAG00000009477 Sarcophilus harrisii ENSSHAG00000009477 I 0.826
SALL1 Anolis carolinensis ENSACAG00000014399 I 0.824
ENSLACG00000003556 Latimeria chalumnae ENSLACG00000003556 I 0.823
ENSPPYG00000007345 Pongo abelii ENSPPYG00000007345 I 0.822
ENSGMOG00000006103 Gadus morhua ENSGMOG00000006103 I 0.815
ENSAMXG00000018599 Astyanax mexicanus ENSAMXG00000018599 I 0.812
sall1a Danio rerio ENSDARG00000074319 I 0.811
SALL1 Procavia capensis ENSPCAG00000008162 I 0.803
ENSCSAG00000005319 Chlorocebus sabaeus ENSCSAG00000005319 I 0.792
ENSAMXG00000017702 Astyanax mexicanus ENSAMXG00000017702 I 0.772
sall3.L Xenopus laevis XB-GENE-866033 I 0.771
SALL3 Echinops telfairi ENSETEG00000001481 I 0.769
Aan_R015320 Calypte anna Aan_R015320 I 0.766