CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG007024.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG007024.1
T133188_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zbtb12
M00146_2.00
Mus musculus
NGTTCTARRN
NYYTAGAACN
PBM
Badis et al.(2009)
Zbtb12_2932
0.823
0.971
ZBTB12
M04633_2.00
Homo sapiens
RGCTGRRCCGCGYN
NRCGCGGYYCAGCY
SELEX
Yin et al.(2017)
ZBTB12_eDBD_HT-SELEX_1
0.823
0.971
ZBTB12
M04634_2.00
Homo sapiens
AVGACGGCAGGCCB
VGGCCTGCCGTCBT
SELEX
Yin et al.(2017)
ZBTB12_eDBD_HT-SELEX_2
0.823
0.971
ZBTB12
M08389_2.00
Homo sapiens
CTAGAACMB
VKGTTCTAG
ChIP-seq
Schmitges et al.(2016)
Q9Y330_1-3.RCADE
0.823
0.971
ZBTB12
M08269_2.00
Homo sapiens
NNRDTCTAGAACVYNNN
NNNRBGTTCTAGAHYNN
ChIP-seq
Najafabadi et al.(2015b)
ZBTB12
0.823
0.971
ZBTB12
M04635_2.00
Homo sapiens
AGCTGRRCCGCGYN
NRCGCGGYYCAGCT
SELEX
Yin et al.(2017)
ZBTB12_eDBD_Methyl-HT-SELEX_1
0.823
0.971
ZBTB12
M04636_2.00
Homo sapiens
RMGACGDCAGGCCW
WGGCCTGHCGTCKY
SELEX
Yin et al.(2017)
ZBTB12_eDBD_Methyl-HT-SELEX_2
0.823
0.971
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG007024.1
C2H2 ZF
323
345
FMCPRCGKQFNHSSNLNRHMNVH
Alligator_sinensis_CCG007024.1
C2H2 ZF
351
373
HSCGVCGKSFTQKSTLHDHLNLH
Alligator_sinensis_CCG007024.1
C2H2 ZF
379
402
YRCSYCDVRFAHKPAIRRHLKEQH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy